{ "info": { "author": "Anthony Aylward", "author_email": "aaylward@eng.ucsd.edu", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Programming Language :: Python :: 3" ], "description": "# pyhg19\n\nGet the coordinates of a variant from its RSID, or an RSID from its\ncoordinates\n\n## Installation\n\nFirst make sure you have followed the installation procedure for\n[pydbsnp](https://github.com/anthony-aylward/pydbsnp). Then install `pyhg19`\nwith `pip3`:\n\n```sh\npip3 install pyhg19\n```\nor\n```sh\npip3 install --user pyhg19\n```\n\nFor full functionality, you should appropriately set environment variables\n`PYHG19_PATH`, `PYHG19_MASKED`, `PYHG19_BOWTIE2_INDEX`. For example, you could\nadd this to your `.bash_profile`:\n\n```bash\nexport PYHG19_PATH=\nexport PYHG19_MASKED=\nexport PYHG19_BOWTIE2_INDEX=\n```\n\n## Examples\n\n```python\nimport pyhg19\nrs10_coord = pyhg19.coord('rs10')\nprint(f'rs10 is on chromosome {rs10_coord.chr} at position {rs10_coord.pos}')\n\nrs10_coord_tuple = pyhg19.coord_tuple('rs10')\nprint(\n 'rs10 is on chromosome {} at position {}'\n .format(rs10_coord_tuple[0], rs10_coord_tuple[1])\n)\n\nrs_something = pyhg19.rsid(chr=1, pos=10019)\nprint(\n 'The RSID of the variant on chromosome 1 at position 10019 is {}.'\n .format(rs_something)\n)\n```\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/anthony-aylward/pyhg19.git", "keywords": "", "license": "", "maintainer": "", "maintainer_email": "", "name": "pyhg19", "package_url": "https://pypi.org/project/pyhg19/", "platform": "", 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