{
    "info": {
        "author": "FEI YUAN",
        "author_email": "fyuan4@uh.edu",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 3 - Alpha",
            "Environment :: Console",
            "Intended Audience :: End Users/Desktop",
            "Operating System :: MacOS :: MacOS X",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: POSIX",
            "Programming Language :: Python",
            "Topic :: Utilities"
        ],
        "description": "`pygenomes` (formally named `pygenomes`) is a Python module and also a command-\r\nline tool for downloading genome data from UCSC ftp site. \r\n\r\nUsing this tool you can easily check available taxa or available groups of \r\ntaxa by simply typing the name of the tool or add ``-g`` flag with a group \r\nname. \r\n\r\nDownload genome or chromosome data with this tool also very simple. You can \r\ndownload data by using commom name, scientific name, or even specific assembly \r\nname (e.g. ``human``, ``Homo sapiens``, ``hg38``). \r\n\r\nIf there is available data in the ftp site, you also can downlaod data via \r\ninteractive mode, which will allow you to choose specific genome assembly.To \r\ndo this, you only need to assign a True value for assembly, then according to \r\nthe available list prompted to you simply input the interested assembly.\r\n\r\nThe tool only tested on Python2.7, may not work on python3.\r\n\r\n\r\nFeatures\r\n--------\r\n\r\n- Install a Python module named ``pygenomes.py``\r\n- Install a Python command-line script named ``pygenomes``\r\n- Easily check available taxa and genomes in commend-line\r\n- Simply download genomes via comman, scientific, or assembly name\r\n- Using interactive mode, simply download specific assembly genome\r\n- Easily download genome and chromosome in specific file format\r\n- Pure Python module and without any third-party dependence\r\n\r\n\r\nExamples\r\n--------\r\n\r\nYou can use `pygenomes` as a Python module e.g. like in the following\r\ninteractive Python session (the function's signature might still change \r\na bit in the future)::\r\n\r\n    >>> from pygenomes import genomes\r\n    >>>\r\n    # prints out available taxa in group of mammals\r\n    >>> genomes(group='mammals')          \r\n    # download human reference genome (hg19) in .2bit format\r\n    >>> genomes(taxa='human')  \r\n    # interactive mode, ask for inputing and downloading specific assembly\r\n    >>> genomes(taxa='cow', assembly='1')     \r\n    # try to download chromosome data, per fa.gz file per chromosome\r\n    >>> genomes(taxa='cow', chrs='1')   \r\n\r\nIn addition there is a script named ``pygenomes``, which can be used \r\nmore easily from the system command-line like this (you can see many \r\nmore examples when typing ``pygenomes -h`` on the command-line)::\r\n\r\n    $ pygenomes -g -1                 # prints out all available taxa\r\n\r\n    $ pygenomes -g mammal             # prints out all available taxa in group \r\n                                        of mammal\r\n    $ pygenomes -t yeast              # download yeast reference genome in \r\n                                        .2bit format\r\n    $ pygenomes -t yeast -a 1         # interactive mode, ask for inputing and \r\n                                        downloading specific assembly\r\n    $ pygenomes -t cow -f fa.gz       # try to download cow reference genome \r\n                                        in fa.gz format\r\n    $ pygenomes -t dog -a 1 -o /tmp   # interactive mode, ask for inputing, \r\n                                        file will be stored in /tmp\r\n    $ pygenomes -t cat -c 1           # download cat chromosome data, per \r\n                                        chromosome per fa.gz file",
        "description_content_type": null,
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        "home_page": "https://github.com/TinyNecessaryTools/Biology",
        "keywords": "genome,download,ucsc,bioinformatic,biology",
        "license": "MIT",
        "maintainer": "",
        "maintainer_email": "fyuan4@uh.edu",
        "name": "pygenomes",
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        "release_url": "https://pypi.org/project/pygenomes/0.1.0/",
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        "summary": "a command-line tool for downloading genome data from UCSC ftp site.",
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