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    "info": {
        "author": "Anthony Aylward",
        "author_email": "aaylward@eng.ucsd.edu",
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        "description": "# pydbsnp\n\nInterface with dbSNP VCF data\n\n## Installation\n\n**Step 0 (optional):** If you don't want to bother with environment variables\nand don't care about how `pydbsnp` works under the hood, skip this step.\n\nIf you wish, you can determine the location where `pydbsnp` looks for relevant\ndata using four environment variables: `PYDBSNP_VCF_GRCH37`,\n`PYDBSNP_RSID_GRCH37`, `PYDBSNP_VCF_GRCH38`, `PYDBSNP_RSID_GRCH38`. The `VCF`\nvariables determine the location of the VCF data, the `RSID` variables\ndetermine the location of the rsid indices. For example, you could add this\nto your `.bash_profile`:\n\n```bash\nexport PYDBSNP_VCF_GRCH37=<path of your choice>\nexport PYDBSNP_RSID_GRCH37=<path of your choice>\nexport PYDBSNP_VCF_GRCH38=<path of your choice>\nexport PYDBSNP_RSID_GRCH38=<path of your choice>\n```\n\nIf you set these variables before continuing to the next step, `pydbsnp` will\nuse them to determine where it places downloaded VCF files and RSID indices.\n\n**Step 1:** install the python package via `pip3`\n\n```sh\npip3 install pydbsnp\n```\nor\n```sh\npip3 install --user pydbsnp\n```\n\n**Step 2:** Once the python package is installed, download and index the dbSBP\nVCF data:\n\n```sh\npydbsnp-download\npydbsnp-index\n```\n\nFor hg19/GRCh37 coordinates:\n\n```sh\npydbsnp-download --reference-build GRCh37\npydbsnp-index\n```\n\n## Command line usage\n\n```sh\npydbsnp-query -h\n```\n\n```sh\npydbsnp-query rs231361\npydbsnp-query chr8:118184783\npydbsnp-query --reference-build GRCh37 rs231361\npydbsnp-query rs231361 chr8:118184783 rs7903146\n```\n\n## API\n\nTwo classes are provided: `Variant` and `GeneralizedVariant`.\n\nAn object of the `Variant` class has an attribute for each relevant field\nof the VCF.\n```python\nfrom pydbsnp import Variant\nv = Variant(id='rs8056814')\nprint(v.chrom, v.pos, v.id, v.ref, v.alt)\nprint(v.info)\nw = Variant(id='rs8056814', reference_build='GRCh37')\nprint(w.chrom, w.pos)\nx = Variant('chr16', 75218429)\nprint(x)\nhelp(Variant)\n```\n\nAn object of the `GeneralizedVariant` class is similar, but each attribute\nis a tuple which may have multiple items. For example, one RSID may map\nto two sets of coordinates.\n```python\ngv = GeneralizedVariant(id='rs8056814')\nprint(gv.chrom, gv.pos, gv.id, gv.ref, gv.alt)\n```\n\n",
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