{ "info": { "author": "Julian de Ruiter", "author_email": "julianderuiter@gmail.com", "bugtrack_url": null, "classifiers": [ "Intended Audience :: Developers", "Intended Audience :: Science/Research", "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5" ], "description": "PyBiomart\n=========\n\n.. image:: https://travis-ci.org/jrderuiter/pybiomart.svg?branch=develop\n :target: https://travis-ci.org/jrderuiter/pybiomart\n\n.. image:: https://coveralls.io/repos/github/jrderuiter/pybiomart/badge.svg?branch=develop\n :target: https://coveralls.io/github/jrderuiter/pybiomart?branch=develop\n\nA simple and pythonic biomart interface for Python.\n\nThe intent of pybiomart is to provide a simple interface to biomart, which can be used to easily query biomart databases from Python. In this sense, pybiomart aims to provide functionality similar to packages such as biomaRt (which provides access to biomart from R).\n\nDocumentation\n-------------\n\nDocumentation is available at: `https://jrderuiter.github.io/pybiomart `_.\n\nExamples\n--------\n\nRetrieving and querying a dataset using the server interface:\n\n.. code:: python\n\n from pybiomart import Server\n\n server = Server(host='http://www.ensembl.org')\n\n dataset = (server.marts['ENSEMBL_MART_ENSEMBL']\n .datasets['hsapiens_gene_ensembl'])\n\n dataset.query(attributes=['ensembl_gene_id', 'external_gene_name'],\n filters={'chromosome_name': ['1','2']})\n\nRetrieving a dataset directly with known dataset name:\n\n.. code:: python\n\n from pybiomart import Dataset\n\n dataset = Dataset(name='hsapiens_gene_ensembl',\n host='http://www.ensembl.org')\n\n dataset.query(attributes=['ensembl_gene_id', 'external_gene_name'],\n filters={'chromosome_name': ['1','2']})\n\nLicense\n-------\n\nReleased under the MIT license.\n", "description_content_type": null, "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/jrderuiter/pybiomart", "keywords": "", "license": "MIT", "maintainer": "", "maintainer_email": "", "name": "pybiomart", "package_url": "https://pypi.org/project/pybiomart/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/pybiomart/", "project_urls": { "Homepage": "https://github.com/jrderuiter/pybiomart" }, "release_url": "https://pypi.org/project/pybiomart/0.2.0/", "requires_dist": [ "future", "pandas", "requests", "requests-cache", "bumpversion; extra == 'dev'", "pytest (>=2.7); extra == 'dev'", "pytest-cov; extra == 'dev'", "pytest-helpers-namespace; extra == 'dev'", "pytest-mock; extra == 'dev'", "python-coveralls; extra == 'dev'", "sphinx; extra == 'dev'", "sphinx-autobuild; extra == 'dev'", "sphinx-rtd-theme; extra == 'dev'" ], "requires_python": "", "summary": "A simple pythonic interface to biomart.", "version": "0.2.0" }, "last_serial": 2865459, "releases": { "0.1": [ { "comment_text": "", "digests": { "md5": "66beacaec55731ac76bb66b14a8a88e7", "sha256": "498a0f82588432cce6f34503c86aa6b4829f43e77ffa103341ae9c5909be744a" }, "downloads": -1, "filename": "pybiomart-0.1.tar.gz", "has_sig": false, "md5_digest": "66beacaec55731ac76bb66b14a8a88e7", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 24856, "upload_time": "2016-03-28T19:14:58", "url": "https://files.pythonhosted.org/packages/5b/1d/a990243ca4e3dc1109886b9f57c4347e67015abe5e661c865ef265f8faaa/pybiomart-0.1.tar.gz" } ], "0.2.0": [ { "comment_text": "", "digests": { "md5": "62d1c3ca26b86be1b123a96773fecd2d", "sha256": "a5f6b74341784d848db23cc755707dc26b03afe6be3513bc8bd97a1d080daa8f" }, "downloads": -1, "filename": "pybiomart-0.2.0-py2-none-any.whl", "has_sig": false, "md5_digest": "62d1c3ca26b86be1b123a96773fecd2d", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": null, "size": 10587, "upload_time": "2017-05-10T21:18:45", "url": "https://files.pythonhosted.org/packages/56/e8/91d1f19cf71471b5baac69df805cc41c0aec82b6b4646c535a7a9af4edec/pybiomart-0.2.0-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "18b554310b0690f321bf682559683387", "sha256": "c88bdd97887e2144a8be44036901aa032a824c82b42c33e24515b6c786b80933" }, "downloads": -1, "filename": "pybiomart-0.2.0-py3-none-any.whl", "has_sig": false, "md5_digest": "18b554310b0690f321bf682559683387", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 10586, "upload_time": "2017-05-10T21:17:57", "url": "https://files.pythonhosted.org/packages/4a/6d/23cf5ae8b0a549a60164c49836c8e8eb393747b5fd00a7b5d9445886e0d8/pybiomart-0.2.0-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "3a6dd8ba1f3971798e34de4e4c1c610b", "sha256": "e9eac20db921820670c646d99725b0ee279e407379e5e8c3ec7245a07425d8fe" }, "downloads": -1, "filename": "pybiomart-0.2.0.tar.gz", "has_sig": false, "md5_digest": "3a6dd8ba1f3971798e34de4e4c1c610b", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 195840, "upload_time": "2017-05-10T21:17:59", "url": "https://files.pythonhosted.org/packages/91/22/3c7f20669238c228c2768c733377078e57b60bc58b93a7b517f56b795df0/pybiomart-0.2.0.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "62d1c3ca26b86be1b123a96773fecd2d", "sha256": "a5f6b74341784d848db23cc755707dc26b03afe6be3513bc8bd97a1d080daa8f" }, "downloads": -1, "filename": "pybiomart-0.2.0-py2-none-any.whl", "has_sig": false, "md5_digest": "62d1c3ca26b86be1b123a96773fecd2d", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": null, "size": 10587, "upload_time": "2017-05-10T21:18:45", "url": "https://files.pythonhosted.org/packages/56/e8/91d1f19cf71471b5baac69df805cc41c0aec82b6b4646c535a7a9af4edec/pybiomart-0.2.0-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "18b554310b0690f321bf682559683387", "sha256": "c88bdd97887e2144a8be44036901aa032a824c82b42c33e24515b6c786b80933" }, "downloads": -1, "filename": "pybiomart-0.2.0-py3-none-any.whl", "has_sig": false, "md5_digest": "18b554310b0690f321bf682559683387", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": null, "size": 10586, "upload_time": "2017-05-10T21:17:57", "url": "https://files.pythonhosted.org/packages/4a/6d/23cf5ae8b0a549a60164c49836c8e8eb393747b5fd00a7b5d9445886e0d8/pybiomart-0.2.0-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "3a6dd8ba1f3971798e34de4e4c1c610b", "sha256": "e9eac20db921820670c646d99725b0ee279e407379e5e8c3ec7245a07425d8fe" }, "downloads": -1, "filename": "pybiomart-0.2.0.tar.gz", "has_sig": false, "md5_digest": "3a6dd8ba1f3971798e34de4e4c1c610b", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 195840, "upload_time": "2017-05-10T21:17:59", "url": "https://files.pythonhosted.org/packages/91/22/3c7f20669238c228c2768c733377078e57b60bc58b93a7b517f56b795df0/pybiomart-0.2.0.tar.gz" } ] }