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        "author": "CIBMTR",
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            "License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)",
            "Natural Language :: English",
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        "description": "===============================\npyGFE\n===============================\n\n\n.. image:: https://img.shields.io/pypi/v/pygfe.svg\n        :target: https://pypi.python.org/pypi/pygfe\n\n.. image:: https://img.shields.io/travis/mhalagan-nmdp/pygfe.svg\n        :target: https://travis-ci.org/mhalagan-nmdp/pygfe\n\n.. image:: https://readthedocs.org/projects/pygfe/badge/?version=latest\n        :target: https://pygfe.readthedocs.io/en/latest/?badge=latest\n        :alt: Documentation Status\n\n.. image:: https://pyup.io/repos/github/mhalagan-nmdp/pygfe/shield.svg\n     :target: https://pyup.io/repos/github/mhalagan-nmdp/pygfe/\n     :alt: Updates\n\n\nPython Boilerplate contains all the boilerplate you need to create a Python package.\n\n\n* Free software: LGPL 3.0\n* Documentation: https://pygfe.readthedocs.io.\n\nDocker\n--------\n\n.. code-block:: shell\n\n  docker pull nmdpbioinformatics/py-gfe\n\n.. code-block:: \n\n\tdocker run -it --rm -v $PWD:/opt nmdpbioinformatics/py-gfe seq2gfe \\\n\t\t-f /opt/your_fastafile.fasta -l HLA-A\n\n\nExample\n--------\n\n.. code-block:: python3\n\n    >>> from Bio import SeqIO\n    >>> from BioSQL import BioSeqDatabase\n    >>> from seqann.sequence_annotation import BioSeqAnn\n    >>> import pygfe\n    >>> seq_file = 'test_dq.fasta'\n    >>> gfe = pygfe.pyGFE()\n    >>> server = BioSeqDatabase.open_database(driver=\"pymysql\", user=\"root\",\n    ...                                       passwd=\"\", host=\"localhost\",\n    ...                                      db=\"bioseqdb\")\n    >>> seqann = BioSeqAnn(server=server)\n    >>> seq_rec = list(SeqIO.parse(seq_file, 'fasta'))[0]\n    >>> annotation = seqann.annotate(seq_rec, \"HLA-DQB1\")\n    >>> gfe = gfe.get_gfe(annotation, \"HLA-DQB1\")\n    >>> print(gfe)\n    HLA-DQB1w0-4-0-141-0-12-0-4-0-0-0-0-0\n\nCredits\n---------\n\nThis package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.\n\n.. _Cookiecutter: https://github.com/audreyr/cookiecutter\n.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage\n\n\n\n=======\nHistory\n=======\n\n0.0.1 (2017-11-09)\n------------------\n\n* First release on PyPI.\n\n\n\n",
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