{ "info": { "author": "Luis Howell, Bernd Porr", "author_email": "luisbhowell@gmail.com, bernd.porr@glasgow.ac.uk", "bugtrack_url": null, "classifiers": [ "Intended Audience :: Developers", "Operating System :: OS Independent", "Programming Language :: Python :: 3" ], "description": "=============\nECG Detectors\n=============\n\nA collection of 7 ECG heartbeat detection algorithms implemented in Python. Developed in conjunction with a new ECG database: http://researchdata.gla.ac.uk/716/. This repository also contains a testing class for the MITDB and the new University of Glasgow database. In addition the module `hrv` provides tools to\nanalyse heartrate variability.\n\n\nInstallation\n============\n\nLinux / Mac::\n\n pip3 install py-ecg-detectors [--user]\n\nWindows::\n\n pip install py-ecg-detectors [--user]\n\nFrom source::\n\n python3 setup.py install [--user]\n\n\nUse the option `--user` if you don't have system-wise write permission.\n\n\nECG Detector Class Usage\n========================\n\nBefore the detectors can be used the class must first be initalised with the sampling rate of the ECG recording:\n\n.. code-block:: python\n\n from ecgdetectors import Detectors\n detectors = Detectors(fs)\n\nSee `usage_example.py` for an example of how to use the detectors.\n\nHamilton\n--------\n\nImplementation of P.S. Hamilton, \u201cOpen Source ECG Analysis Software Documentation\u201d, E.P.Limited, 2002. Usage::\n \n r_peaks = detectors.hamilton_detector(unfiltered_ecg)\n\n \nChristov\n--------\n\nImplementation of Ivaylo I. Christov, \u201cReal time electrocardiogram QRS detection using combined adaptive threshold\u201d, BioMedical Engineering OnLine 2004, vol. 3:28, 2004. Usage::\n\n r_peaks = detectors.christov_detector(unfiltered_ecg)\n\n\nEngelse and Zeelenberg\n----------------------\n\nImplementation of W. Engelse and C. Zeelenberg, \u201cA single scan algorithm for QRS detection and feature extraction\u201d, IEEE Comp. in Cardiology, vol. 6, pp. 37-42, 1979 with modifications A. Lourenco, H. Silva, P. Leite, R. Lourenco and A. Fred, \u201cReal Time Electrocardiogram Segmentation for Finger Based ECG Biometrics\u201d, BIOSIGNALS 2012, pp. 49-54, 2012. Usage::\n \n r_peaks = detectors.engzee_detector(unfiltered_ecg)\n\n\n\nPan and Tompkins\n----------------\n\nImplementation of Jiapu Pan and Willis J. Tompkins. \u201cA Real-Time QRS Detection Algorithm\u201d. In: IEEE Transactions on Biomedical Engineering BME-32.3 (1985), pp. 230\u2013236. Usage::\n \n r_peaks = detectors.pan_tompkins_detector(unfiltered_ecg)\n\n\nStationary Wavelet Transform\n----------------------------\n\nImplementation based on Vignesh Kalidas and Lakshman Tamil. \u201cReal-time QRS detector using Stationary Wavelet Transform for Automated ECG Analysis\u201d. In: 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE). Uses the Pan and Tompkins thresolding method. Usage::\n \n r_peaks = detectors.swt_detector(unfiltered_ecg)\n\n\nTwo Moving Average\n------------------\n\nImplementation of Elgendi, Mohamed & Jonkman, Mirjam & De Boer, Friso. (2010). \"Frequency Bands Effects on QRS Detection\" The 3rd International Conference on Bio-inspired Systems and Signal Processing (BIOSIGNALS2010). 428-431.\nUsage::\n \n r_peaks = detectors.two_average_detector(unfiltered_ecg)\n\n \n\nMatched Filter\n--------------\n\nFIR matched filter using template of QRS complex. Template provided for 250Hz and 360Hz. Uses the Pan and Tompkins thresolding method. Usage::\n\n r_peaks = detectors.matched_filter_detector(unfiltered_ecg)\n\n\nHeartrate variability analysis\n==============================\n\nThe module `hrv` provides a large collection of heartrate\nvariability measures which are methods of the class `HRV`::\n\n HR(self, rr_samples)\n Calculate heart-rates from R peak samples.\n\n NN20(self, rr_samples)\n Calculate NN20, the number of pairs of successive\n NNs that differ by more than 20 ms.\n\n NN50(self, rr_samples)\n Calculate NN50, the number of pairs of successive\n NNs that differ by more than 50 ms.\n\n RMSSD(self, rr_samples, normalise=False)\n Calculate RMSSD (root mean square of successive differences).\n\n SDANN(self, rr_samples, average_period=5.0, normalise=False)\n Calculate SDANN, the standard deviation of the average\n RR intervals calculated over short periods.\n\n SDNN(self, rr_samples, normalise=False)\n Calculate SDNN, the standard deviation of NN intervals.\n\n SDSD(self, rr_samples)\n Calculate SDSD (standard deviation of successive differences),\n the standard deviation of the successive differences between adjacent NNs.\n\n fAnalysis(self, rr_samples)\n Frequency analysis to calc self.lf, self.hf,\n returns the LF/HF-ratio.\n\n pNN20(self, rr_samples)\n Calculate pNN20, the proportion of NN20 divided by total number of NNs.\n\n pNN50(self, rr_samples)\n Calculate pNN50, the proportion of NN50 divided by total number of NNs.\n\nFor parameters and additional info use the python help function::\n\n import hrv\n help(hrv)\n\nThe example `hrv_time_domain_analysis.py` calculates the heartrate\nvariability in the timedomain.\n\n\nBenchmarking\n============\n\n`run_all_benchmarks.py` calculates the R peak timestamps\nfor all detectors, the true/false detections/misses and\nsaves them in .csv files. Open the script itself or use python's\nhelp function of how to obtain the ECG data such as the MIT db.\n\n`show_stats_plots.py` takes then the .csv files, displays\nthe results of the different detectors and calculates the stats.\n\n`hrv_time_domain_analysis.py` performs a timedomain analysis\nbetween sitting and a math test using the EngZee detector and\nthe wavelet detector for comparison.\n\n\nAuthors\n=======\n\nLuis Howell, luisbhowell@gmail.com\n\nBernd Porr, bernd.porr@glasgow.ac.uk\n\n\ncitation / DOI\n==============\n\nDOI: 10.5281/zenodo.3353396\n\nhttps://doi.org/10.5281/zenodo.3353396\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/berndporr/py-ecg-qrs-detectors", "keywords": "", "license": "GPL 3.0", "maintainer": "", "maintainer_email": "", "name": "py-ecg-detectors", "package_url": "https://pypi.org/project/py-ecg-detectors/", "platform": "", 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