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        "description": "# py-cortex-api\nPython API for [cortex](https://github.com/iqbal-lab/cortex).\n\n# Install\n```\npip3 install git+https://github.com/iqbal-lab-org/py-cortex-api\n```\n\n#### Requirements\n```\nsudo apt install r-base-core\n```\n\n# Usage\nUse a list to pass in reads files, even if there is only one file.\n\n```python\nimport cortex\ncortex.calls(\"./reference.fasta\",\n             [\"./reads.fastq\"],\n             \"./output\",\n             \"sample_name\")\n```\n\n# Licence\nMIT\n\n\n",
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