{
    "info": {
        "author": "Galaxy Project",
        "author_email": "jmchilton@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 5 - Production/Stable",
            "Environment :: Console",
            "Intended Audience :: Developers",
            "License :: OSI Approved :: Apache Software License",
            "Natural Language :: English",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: POSIX",
            "Programming Language :: Python :: 2",
            "Programming Language :: Python :: 2.6",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6"
        ],
        "description": ".. figure:: https://galaxyproject.org/images/galaxy-logos/pulsar_transparent.png\n   :alt: Pulsar Logo\n\n.. image:: https://readthedocs.org/projects/pulsar/badge/?version=latest\n   :target: http://pulsar.readthedocs.io/en/latest/?badge=latest\n   :alt: Documentation Status\n.. image:: https://badge.fury.io/py/pulsar-app.svg\n   :target: https://pypi.python.org/pypi/pulsar-app/\n   :alt: Pulsar on the Python Package Index (PyPI)\n.. image:: https://travis-ci.org/galaxyproject/pulsar.png?branch=master\n   :target: https://travis-ci.org/galaxyproject/pulsar\n   :alt: Build Status\n.. image:: https://coveralls.io/repos/galaxyproject/pulsar/badge.png?branch=master\n   :target: https://coveralls.io/r/galaxyproject/pulsar?branch=master\n   :alt: Test Coverage\n\nThis project is a Python server application that allows a `Galaxy\n<http://galaxyproject.org>`_ server to run jobs on remote systems (including\nWindows) without requiring a shared mounted file systems. Unlike traditional\nGalaxy job runners - input files, scripts, and config files may be transferred\nto the remote system, the job is executed, and the results are transfered back\nto the Galaxy server - eliminating the need for a shared file system.\n\nFull documentation for the project can be found on `Read The Docs\n<https://pulsar.readthedocs.io/>`_.\n\n------------------\nConfiguring Galaxy\n------------------\n\nGalaxy job runners are configured in Galaxy's ``job_conf.xml`` file. Some small\nexamples of how to configure this can be found `here\n<https://pulsar.readthedocs.org/en/latest/galaxy_conf.html>`__, but be sure\nto checkout ``job_conf.xml.sample_advanced`` in your Galaxy code base or on\n`Github\n<https://github.com/galaxyproject/galaxy/blob/master/config/job_conf.xml.sample_advanced>`_\nfor complete information.\n\n------------------\nQuickstart\n------------------\n\nFull details on different ways to install Pulsar can be found in the `install\nsection <https://pulsar.readthedocs.org/en/latest/install.html>`__ of the\ndocumentaiton, but if your machine has the proper Python dependencies\navailable it can be quickly download and a test job run with.\n\n::\n\n    mkdir pulsar\n    cd pulsar\n    virtualenv venv\n    . venv/bin/activate # .venv\\Scripts\\activate if Windows\n    pip install pulsar-app\n    pulsar-config \n    pulsar --daemon # just pulsar if Windows\n    pulsar-check # runs a test job\n\nThe `configuration documentation\n<https://pulsar.readthedocs.org/en/latest/configure.html>`__\nhas many details on securing your Pulsar server and enabling advanced features\nsuch as cluster integration and message queue communication.\n\n-----------------------\nDevelopment and Testing\n-----------------------\n\nThe recommended approach to setting up a development environment for Pulsar on\nLinux or Mac OS X is rougly as follows::\n\n    git clone https://github.com/galaxyproject/pulsar\n    cd pulsar\n    virtualenv .venv\n    . .venv/bin/activate # .venv\\Scripts\\activate if Windows\n    pip install -r requirements.txt\n    pip install -r dev-requirements.txt\n\nThis project is distributed with unit and integration tests (many of which\nwill not run under Windows), the following command will install the needed\npython components to run these tests. The following command will then run\nthese tests::\n\n    make tests\n\nThe following command will then produce a coverage report\ncorresponding to this test and place it in the ``coverage_html_report``\nsubdirectory of this project.::\n\n    coverage html\n\nCheckout the `Contributing\n<https://pulsar.readthedocs.org/en/latest/contributing.html>`_ documentation\nfor many more details on developing and contributing to Pulsar.\n\nPlease note that this project is released with a `Contributor Code of Conduct \n<https://pulsar.readthedocs.org/en/latest/conduct.html>`__. By participating\nin this project you agree to abide by its terms.\n\n\n\n\nHistory\n-------\n\n.. to_doc\n\n---------------------\n0.13.0 (2019-06-25)\n---------------------\n\n* Various improvements and simplifications to Kubernetes job execution.\n\n---------------------\n0.12.1 (2019-06-03)\n---------------------\n\n* Retry botched release that didn't include all relevant commits.\n\n---------------------\n0.12.0 (2019-06-03)\n---------------------\n\n* Revise Python Galaxy dependencies to use newer style Galaxy decomposition.\n  galaxy-lib can no longer be installed in Pulsar's environment, so you will\n  likely need to rebuild your Pulsar virtualenv for this release.\n  `Pull Request 187`_\n* Add a ``Dockerfile`` for Pulsar with CVMFS (thanks to `@nuwang`_ and `@afgane`).\n  `Pull Request 166`_\n* Various small improvements to Kubernetes pod execution environment.\n  `Pull Request 190`_\n* Improve readme linting.\n  `Pull Request 186`_\n* Update example docs for Condor (thanks to `@bgruening`_).\n  `Pull Request 189`_\n\n---------------------\n0.11.0 (2019-05-16)\n---------------------\n\n* Implement staging Galaxy metadata input files in the client.\n  39de377_\n* Fix 'amqp_ack_republish_time' in sample (thanks to `@dannon`_).\n  `Pull Request 185`_\n* Updated amqp_url in job_conf_sample_mq_rsync.xml (thanks to `@AndreasSko`_).\n  `Pull Request 184`_\n* Use wildcard char for pulsar version (thanks to `@VJalili`_).\n  `Pull Request 181`_\n* Refactor toward more structured inputs. f477bc4_\n* Refactor toward passing objectstore identifying information around.\n  `Pull Request 180`_\n* Rework imports for new Galaxy library structure. da086c9_\n* Revert empty input testing, it really probably should cause a failure\n  to transfer a non-existent file.\n  8bd5511_\n* Better client mapper documentation. b6278b4_\n\n---------------------\n0.10.0 (2019-05-06)\n---------------------\n\n* Implement support for Kubernetes two container pod jobs - staging and\n  tool execution as separate containers in the same job's pod.\n  `Pull Request 176`_, `Pull Request 178`_\n\n---------------------\n0.9.1 (2019-05-01)\n---------------------\n\n* Fix duplicate inputs being a problem when staging Galaxy files.\n  `Pull Request 175`_\n* Fix deprecated ``assertEquals()`` (thanks to @nsoranzo). `Pull Request 173`_\n* Fix a method missing problem. `Pull Request 174`_\n* Sync \"recent\" galaxy runner util changes. `Pull Request 177`_\n\n---------------------\n0.9.0 (2019-04-12)\n---------------------\n\n* Add configuration parameter to limit stream size read from disk. `Pull\n  Request 157`_\n* Pass full job status for failed and lost jobs. `Pull Request 159`_\n* Improve message handling if problems occur during job setup/staging. `Pull\n  Request 160`_\n* Rework preprocessing job state to improve restartability and reduce job loss.\n  **This change should be applied while no jobs are running.**\n  `Pull Request 164`_\n* Add support for overriding config through environment variables (thanks to\n  @nuwang). `Pull Request 165`_\n* Minor docs updates (thanks to @afgane). `Pull Request 170`_\n* Python 3 fixes in Pulsar client (thanks to @mvdbeek). `Pull Request 172`_\n\n---------------------\n0.8.3 (2018-02-08)\n---------------------\n\n* Create universal wheels to enable Python 3 support when installing from PyPI\n  (thanks to @nsoranzo).\n  `Pull Request 156`_\n\n---------------------\n0.8.1 (2018-02-08)\n---------------------\n\n* Update link for logo image. `Pull Request 145`_\n* Minor error and log message typos (thanks to @blankenberg).\n  `Pull Request 146`_, `Pull Request 153`_\n* Fixes/improvements for catching quoted tool files. `Pull Request 148`_\n* Fix config sample parsing so run.sh works out of the box.\n  `Pull Request 149`_\n\n---------------------\n0.8.0 (2017-09-21)\n---------------------\n\n* Support new features in Galaxy job running/scripting so that Pulsar respects\n  ``$GALAXY_VIRTUAL_ENV`` and ``$PRESERVE_GALAXY_ENVIRONMENT``. Fix remote\n  metadata in cases where the tool environment changes the ``python`` on\n  ``$PATH``. `Pull Request 137`_\n* Precreate Galaxy tool outputs on the remote before executing (fixes a bug\n  related to missing output files on stage out). `Pull Request 141`_\n* Support the remote_transfer file action without setting the\n  ``jobs_directory`` destination param `Pull Request 136`_\n* Fix invalid character in job managers documentation (thanks to @mapa17).\n  `Pull Request 130`_\n* Fix ``conda_auto_*`` option resolution and include a sample\n  ``dependency_resolvers_conf.xml`` (thanks to @mapa17). `Pull Request 132`_\n* Fix tox/Travis tests. `Pull Request 138`_, `Pull Request 139`_,\n  `Pull Request 140`_\n* Fix a bug with AMQP acknowledgement. `Pull Request 143`_\n\n---------------------\n0.7.4 (2017-02-07)\n---------------------\n\n* Fix Conda resolution and add a test case. 11ce744_\n* Style fixes for updated flake8 libraries. 93ab8a1_, 3573341_\n* Remove unused script. 929bffa_\n* Fixup README. 629fdea_\n\n\n---------------------\n0.7.3 (2016-10-31)\n---------------------\n\n* Fix  \"AttributeError\" when submitting a job as a real user.\n  `Pull Request 124`_, `Issue 123`_\n\n---------------------\n0.7.2 (2016-08-31)\n---------------------\n\n* Fix bug causing loops on in response to preprocessing error conditions.\n\n---------------------\n0.7.1 (2016-08-29)\n---------------------\n\n* Do a release to circumvent a tool version logic error in Galaxy (\n  released Galaxy versions think 0.7.0 < 0.7.0.dev3).\n\n---------------------\n0.7.0 (2016-08-26)\n---------------------\n\n* Update Makefile to allow release pulsar as an application and a library \n  for Galaxy at the same time.\n* Small update to test scripts for TravisCI changes.\n* Improvements for embedded Galaxy runner. (TODO: fill this out)\n* Remove support for Python 2.6. 60bf962_\n* Update docs to describe project goverance and reuse Galaxy's\n  Code of Conduct. 7e23d43_, dc47140_\n* Updated cluster slots detection for SLURM from Galaxy. cadfc5a_\n* Various changes to allow usage within Galaxy as a library. ce9d4f9_\n* Various changes to allow embedded Pulsar managers within Galaxy.\n  ce9d4f9_, d262323_, 8f7c04a_\n* Introduce a separate working and metadata directory as required for\n  Galaxy 16.04 that requires this separation. 6f4328e_\n* Improve logging and comments. 38953f3_, a985107_, ad33cb9_\n* Add Tox target for Python 2.7 unit testing. d7c524e_\n* Add ``Makefile`` command for setup.py develop. fd82d00_\n\n---------------------\n0.6.1 (2015-12-23)\n---------------------\n\n* Tweak release process that left 0.6.0 with an incorrect PyPI description page.\n\n---------------------\n0.6.0 (2015-12-23)\n---------------------\n\n* Pulsar now depends on the new ``galaxy-lib`` Python package instead of\n  manually synchronizing Python files across Pulsar and Galaxy.\n* Numerous build and testing improvements.\n* Fixed a documentation bug in the code (thanks to @erasche). e8814ae_\n* Remove galaxy.eggs stuff from Pulsar client (thanks to @natefoo). 00197f2_\n* Add new logo to README (thanks to @martenson). abbba40_\n* Implement an optional awknowledgement system on top of the message queue\n  system (thanks to @natefoo). `Pull Request 82`_ 431088c_\n* Documentation fixes thanks to @remimarenco. `Pull Request 78`_, `Pull Request 80`_\n* Fix project script bug introduced this cycle (thanks to @nsoranzo). 140a069_\n* Fix config.py on Windows (thanks to @ssorgatem). `Pull Request 84`_\n* Add a job manager for XSEDE jobs (thanks to @natefoo). 1017bc5_\n* Fix pip dependency installation (thanks to @afgane) `Pull Request 73`_\n\n------------------------\n0.5.0 (2015-05-08)\n------------------------\n\n* Allow cURL downloader to resume transfers during staging in (thanks to\n  @natefoo). 0c61bd9_\n* Fix to cURL downloaders status code handling (thanks to @natefoo). 86f95ce_\n* Fix non-wheel installs from PyPI. `Issue 72`_\n* Fix mesos imports for newer versions of mesos (thanks to @kellrott). fe3e919_\n* More, better logging. 2b3942d_, fa2b6dc_\n\n------------------------\n0.4.0 (2015-04-20)\n------------------------\n\n* Python 3 support. `Pull Request 62`_\n* Fix bug encountered when running ``pulsar-main`` and ``pulsar-config`` commands as scripts. 9d43ae0_\n* Add ``pulsar-run`` script for issues commands against a Pulsar server (experimental). 3cc7f74_\n\n------------------------\n0.3.0 (2015-04-12)\n------------------------\n\n* Changed the name of project to Pulsar, moved to Github.\n* New RESTful web services interface.\n* SCP and Rsync file staging options added by E. Rasche. `Pull \n  Request <https://github.com/galaxyproject/pulsar/pull/34>`__\n* Allow YAML based configuration.\n* Support for more traditional ``pip``/``setup.py``-style\n  installs.\n* Dozens of smaller bugfixes and documentation updates.\n\n---------------------\n0.2.0\n---------------------\n\n* Last version named the LWR - found on `BitBucket <https://bitbucket.org/jmchilton/lwr>`__.\n* Still supported in Galaxy as of 15.03 the release.\n* Introduced support for submitting to various queueing systems,\n  operation as a Mesos framework, Docker support, and\n  various other advanced deployment options.\n* Message queue support.\n* Framework for configurable file actions introduced.\n\n---------------------\n0.1.0\n---------------------\n\n* Simple support for running jobs managed by the Python LWR\n  web process.\n* https://bitbucket.org/jmchilton/lwr/branch/0.1\n\n---------------------\n0.0.1\n---------------------\n\n* See the original `announcement <http://dev.list.galaxyproject.org/New-Remote-Job-Runner-td4138951.html>`__\n  and `initial commit <https://github.com/galaxyproject/pulsar/commit/163ed48d5a1902ceb84c38f10db8cbe5a0c1039d>`__.\n\n\n.. github_links\n.. _Pull Request 190: https://github.com/galaxyproject/pulsar/pull/190\n.. _Pull Request 166: https://github.com/galaxyproject/pulsar/pull/166\n.. _Pull Request 186: https://github.com/galaxyproject/pulsar/pull/186\n.. _Pull Request 187: https://github.com/galaxyproject/pulsar/pull/187\n.. _Pull Request 189: https://github.com/galaxyproject/pulsar/pull/189\n.. _Pull Request 185: https://github.com/galaxyproject/pulsar/pull/185\n.. _Pull Request 184: https://github.com/galaxyproject/pulsar/pull/184\n.. _Pull Request 181: https://github.com/galaxyproject/pulsar/pull/181\n.. _Pull Request 180: https://github.com/galaxyproject/pulsar/pull/180\n.. _da086c9: https://github.com/galaxyproject/pulsar/commit/da086c9\n.. _8bd5511: https://github.com/galaxyproject/pulsar/commit/8bd5511\n.. _b6278b4: https://github.com/galaxyproject/pulsar/commit/b6278b4\n.. _39de377: https://github.com/galaxyproject/pulsar/commit/39de377\n.. _f477bc4: https://github.com/galaxyproject/pulsar/commit/f477bc4\n.. _Pull Request 178: https://github.com/galaxyproject/pulsar/pull/178\n.. _Pull Request 176: https://github.com/galaxyproject/pulsar/pull/176\n.. _Pull Request 173: https://github.com/galaxyproject/pulsar/pull/173\n.. _Pull Request 174: https://github.com/galaxyproject/pulsar/pull/174\n.. _Pull Request 175: https://github.com/galaxyproject/pulsar/pull/175\n.. _Pull Request 177: https://github.com/galaxyproject/pulsar/pull/177\n.. _Pull Request 172: https://github.com/galaxyproject/pulsar/pull/172\n.. _Pull Request 170: https://github.com/galaxyproject/pulsar/pull/170\n.. _Pull Request 165: https://github.com/galaxyproject/pulsar/pull/165\n.. _Pull Request 164: https://github.com/galaxyproject/pulsar/pull/164\n.. _Pull Request 160: https://github.com/galaxyproject/pulsar/pull/160\n.. _Pull Request 159: https://github.com/galaxyproject/pulsar/pull/159\n.. _Pull Request 157: https://github.com/galaxyproject/pulsar/pull/157\n.. _Pull Request 156: https://github.com/galaxyproject/pulsar/pull/156\n.. _Pull Request 145: https://github.com/galaxyproject/pulsar/pull/145\n.. _Pull Request 146: https://github.com/galaxyproject/pulsar/pull/146\n.. _Pull Request 148: https://github.com/galaxyproject/pulsar/pull/148\n.. _Pull Request 149: https://github.com/galaxyproject/pulsar/pull/149\n.. _Pull Request 153: https://github.com/galaxyproject/pulsar/pull/153\n.. _Pull Request 143: https://github.com/galaxyproject/pulsar/pull/143\n.. _Pull Request 141: https://github.com/galaxyproject/pulsar/pull/141\n.. _Pull Request 136: https://github.com/galaxyproject/pulsar/pull/136\n.. _Pull Request 137: https://github.com/galaxyproject/pulsar/pull/137\n.. _Pull Request 140: https://github.com/galaxyproject/pulsar/pull/140\n.. _Pull Request 139: https://github.com/galaxyproject/pulsar/pull/139\n.. _Pull Request 138: https://github.com/galaxyproject/pulsar/pull/138\n.. _Pull Request 132: https://github.com/galaxyproject/pulsar/pull/132\n.. _Pull Request 130: https://github.com/galaxyproject/pulsar/pull/130\n.. _11ce744: https://github.com/galaxyproject/pulsar/commit/11ce744\n.. _3573341: https://github.com/galaxyproject/pulsar/commit/3573341\n.. _93ab8a1: https://github.com/galaxyproject/pulsar/commit/93ab8a1\n.. _929bffa: https://github.com/galaxyproject/pulsar/commit/929bffa\n.. _629fdea: https://github.com/galaxyproject/pulsar/commit/629fdea\n.. _Pull Request 124: https://github.com/galaxyproject/pulsar/pull/124\n.. _Issue 123: https://github.com/galaxyproject/pulsar/issues/123\n.. _ad33cb9: https://github.com/galaxyproject/pulsar/commit/ad33cb9\n.. _d7c524e: https://github.com/galaxyproject/pulsar/commit/d7c524e\n.. _fd82d00: https://github.com/galaxyproject/pulsar/commit/fd82d00\n.. _a985107: https://github.com/galaxyproject/pulsar/commit/a985107\n.. _38953f3: https://github.com/galaxyproject/pulsar/commit/38953f3\n.. _6f4328e: https://github.com/galaxyproject/pulsar/commit/6f4328e\n.. _8f7c04a: https://github.com/galaxyproject/pulsar/commit/8f7c04a\n.. _cadfc5a: https://github.com/galaxyproject/pulsar/commit/cadfc5a\n.. _d262323: https://github.com/galaxyproject/pulsar/commit/d262323\n.. _ce0636a: https://github.com/galaxyproject/pulsar/commit/ce0636a\n.. _ce9d4f9: https://github.com/galaxyproject/pulsar/commit/ce9d4f9\n.. _dc47140: https://github.com/galaxyproject/pulsar/commit/dc47140\n.. _7e23d43: https://github.com/galaxyproject/pulsar/commit/7e23d43\n.. _60bf962: https://github.com/galaxyproject/pulsar/commit/60bf962\n.. _Pull Request 73: https://github.com/galaxyproject/pulsar/pull/73\n.. _1017bc5: https://github.com/galaxyproject/pulsar/commit/1017bc5\n.. _Pull Request 84: https://github.com/galaxyproject/pulsar/pull/84\n.. _140a069: https://github.com/galaxyproject/pulsar/commit/140a069\n.. _Pull Request 78: https://github.com/galaxyproject/pulsar/pull/78\n.. _Pull Request 80: https://github.com/galaxyproject/pulsar/pull/80\n.. _Pull Request 82: https://github.com/galaxyproject/pulsar/pull/82\n.. _abbba40: https://github.com/galaxyproject/pulsar/commit/abbba40\n.. _00197f2: https://github.com/galaxyproject/pulsar/commit/00197f2\n.. _431088c: https://github.com/galaxyproject/pulsar/commit/431088c\n.. _e8814ae: https://github.com/galaxyproject/pulsar/commit/e8814ae\n.. _fe3e919: https://github.com/galaxyproject/pulsar/commit/fe3e919\n.. _2b3942d: https://github.com/galaxyproject/pulsar/commit/2b3942d\n.. _fa2b6dc: https://github.com/galaxyproject/pulsar/commit/fa2b6dc\n.. _0c61bd9: https://github.com/galaxyproject/pulsar/commit/0c61bd9\n.. _86f95ce: https://github.com/galaxyproject/pulsar/commit/86f95ce\n.. _Issue 72: https://github.com/galaxyproject/pulsar/issues/72\n.. _3cc7f74: https://github.com/galaxyproject/pulsar/commit/3cc7f74\n.. _9d43ae0: https://github.com/galaxyproject/pulsar/commit/9d43ae0\n.. _Pull Request 62: https://github.com/galaxyproject/pulsar/pull/62\n.. _@dannon: https://github.com/dannon\n.. _@AndreasSko: https://github.com/AndreasSko\n.. _@VJalili: https://github.com/VJalili\n.. _@nuwang: https://github.com/nuwang\n.. _@afgane: https://github.com/afgane\n.. _@bgruening: https://github.com/bgruening\n\n\n",
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