{ "info": { "author": "Luca Ponzoni", "author_email": "ponzoniluca@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Intended Audience :: End Users/Desktop", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", "Operating System :: MacOS :: MacOS X", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "[![Build Status](https://travis-ci.com/prody/rhapsody.svg?branch=master)](https://travis-ci.com/prody/rhapsody)\n[![PyPI](https://img.shields.io/pypi/v/prody-rhapsody.svg)](https://pypi.org/project/prody-rhapsody/)\n[![PyPI - Downloads](https://img.shields.io/pypi/dm/prody-rhapsody.svg)](http://rhapsody.csb.pitt.edu/download.php)\n[![Documentation Status](https://readthedocs.org/projects/rhapsody/badge/?version=latest)](https://rhapsody.readthedocs.io/en/latest/?badge=latest)\n\n# Rhapsody\nPython program, based on ProDy, for pathogenicity prediction of human\nmissense variants.\n\n## Install latest published version using pip\nRhapsody is published on [PyPI](https://pypi.org/). To install Rhapsody,\nplease use pip in the terminal:\n```console\n$ pip install -U prody-rhapsody\n```\nIt might be necessary to manually install the DSSP program, for instance\nby typing on Linux:\n```console\n$ sudo apt install dssp\n```\n\n## Install from source\nRhapsody is written in pure Python so no local compilation is needed.\n\nTo install all needed dependencies, we strongly suggest to use Conda and create\na new environment with:\n```console\n$ conda create -n rhapsody python=3 numpy scikit-learn requests pyparsing matplotlib biopython\n$ conda activate rhapsody\n$ pip install prody\n$ conda install -c salilab dssp\n```\n\nAfter cloning/forking the Rhapsody repository, you can permanently add the\nrepository path to the conda environment with:\n```console\n$ conda develop path/to/local/repository\n```\n\nIf not using Conda, you can manually install all dependencies and then add\nthe repository location to the `PYTHONPATH` environmental variable. For\nexample, on Linux simply add the following line to your `~/.bashrc`:\n```console\nexport PYTHONPATH=\"path/to/local/repository/:$PYTHONPATH\"\n```\n\nIf you are running on Windows, please follow this\n[tutorial](https://stackoverflow.com/a/4855685).\n\n## Running initial setup\n\nAfter installation, please run:\n```console\nimport rhapsody as rd\nrd.initialSetup()\n```\n\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/prody/rhapsody", "keywords": "SAV missense variant protein dynamics", "license": "GPL", "maintainer": "", "maintainer_email": "", "name": "prody-rhapsody", "package_url": "https://pypi.org/project/prody-rhapsody/", "platform": "Windows", "project_url": "https://pypi.org/project/prody-rhapsody/", "project_urls": { "Bug Reports": "https://github.com/prody/rhapsody/issues", "Homepage": "https://github.com/prody/rhapsody", 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