{ "info": { "author": "Umang Varma, Anna Gilbert", "author_email": "uvarma@umich.edu", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", "Operating System :: OS Independent", "Programming Language :: Python :: 3" ], "description": "# PicturedRocks Single Cell Analysis Tool\n\n[![Build Status](https://travis-ci.com/umangv/picturedrocks.svg?branch=master)](https://travis-ci.com/umangv/picturedrocks)\n[![Documentation Status](https://readthedocs.org/projects/picturedrocks/badge/?version=latest)](https://picturedrocks.readthedocs.io/en/latest/?badge=latest)\n\nPicturedRocks is a python package that implements information-theoretic feature selection algorithms. \n\n## Usage\n\nTo install the latest GitHub version of PicturedRocks, do an \"editable\" installation of PicturedRocks:\n```\ngit clone git@github.com:umangv/picturedrocks.git\ncd picturedrocks\npip install -e .\n```\n\nPicturedRocks in compatible with `scanpy` and uses its `AnnData` objects. Most methods require cluster labels to be loaded. \n\n```python\nfrom picturedrocks.read import read_clusts, process_clusts\nadata = read_clusts(adata, \"clust_labels.csv\")\nadata = process_clusts(adata)\n```\n\nMore detailed information can be found on the [online documentation](https://picturedrocks.rtfd.io/).\n\n## Code Style\n\nPull requests are welcome. Please use [numpy-style docstrings](https://sphinxcontrib-napoleon.rtfd.io/) and format your code with [black](https://black.rtfd.io).\n\n## Copyright\n\nCopyright \u00a9 2017-2019 Umang Varma, Anna Gilbert\n\nPicturedRocks is free software: you can redistribute it and/or modify\nit under the terms of the GNU General Public License as published by\nthe Free Software Foundation, either version 3 of the License, or\n(at your option) any later version.\n\nPicturedRocks is distributed in the hope that it will be useful,\nbut WITHOUT ANY WARRANTY; without even the implied warranty of\nMERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\nGNU General Public License for more details.\n\nYou should have received a copy of the GNU General Public License\nalong with PicturedRocks. 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