{ "info": { "author": "M\u00e5ns Magnusson", "author_email": "mans.magnusson@scilifelab.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Environment :: Console", "Intended Audience :: Developers", "License :: OSI Approved :: MIT License", "Programming Language :: Python :: 2", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.3", "Programming Language :: Python :: 3.4", "Topic :: Software Development" ], "description": "[![Build Status](https://travis-ci.org/moonso/phizz.svg)](https://travis-ci.org/moonso/phizz)\n\n# phizz #\n\nTool to query HPO and OMIM\n\n## Installation ##\n\n```pip install phizz```\n\nor \n\n```\n$git clone https://github.com/moonso/phizz.git\n$cd phizz\n$python setup.py install\n```\n\n## Usage ##\n\nUsing command line utility:\n\n```\nUsage: phizz query [OPTIONS]\n\n Query the hpo database.\n\n Print the result in csv format as default.\n\nOptions:\n -c, --config PATH\n -h, --hpo_term TEXT Specify a hpo term\n -m, --mim_term TEXT Specify a omim id\n -o, --outfile FILENAME Specify path to outfile\n -j, --to_json If output should be in json format\n --help Show this message and exit.\n```\n\nso trying:\n\n```\n$ phizz query -m OMIM:615373\n#hpo_id\tdescription\nHP:0011675\tArrhythmia\nHP:0001644\tDilated cardiomyopathy\nHP:0001653\tMitral regurgitation\nHP:0000006\tAutosomal dominant inheritance\nHP:0001711\tAbnormality of the left ventricle\n```\nto json:\n\n```\n$ phizz query --hpo_term HP:0000002 --to_json\n[{\"hpo_term\": \"HP:0000002\", \"description\": \"Abnormality of body height\"}]\n```\n\nImporting in python:\n\n```\nIn [1]: import phizz\n\nIn [2]: phizz.query_disease(['OMIM:615373'])\nOut[2]:\n[{'description': u'Arrhythmia', 'hpo_term': u'HP:0011675'},\n {'description': u'Dilated cardiomyopathy', 'hpo_term': u'HP:0001644'},\n {'description': u'Mitral regurgitation', 'hpo_term': u'HP:0001653'},\n {'description': u'Autosomal dominant 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