{ "info": { "author": "Jeremy McRae", "author_email": "jmcrae@illumina.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "\n|Travis|\n\npeds: basic pedigree parsing\n----------------------------\n\nAll this does is parse pedigree_ files and group individuals within families.\nOnly performs minimal validation.\n\nInstall\n-------\n\n.. code:: bash\n\n pip install peds\n\nUsage\n-----\n\n.. code:: python\n\n from peds import open_ped\n\n families = open_ped(PATH)\n\n family = families[0]\n\n # find affected family members\n affected = [ x for x in family is x.is_affected()]\n\n # find parents\n for person in family:\n father = family.get_father(person)\n mother = family.get_mother(person)\n\n.. |Travis| image:: https://travis-ci.org/jeremymcrae/peds.svg?branch=master\n :target: https://travis-ci.org/jeremymcrae/peds\n.. _pedigree: http://zzz.bwh.harvard.edu/plink/data.shtml#ped\n\n\n", 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