{ "info": { "author": "Jonny Tran", "author_email": "nhat.tran@mavs.uta.edu", "bugtrack_url": null, "classifiers": [ "Development Status :: 2 - Pre-Alpha", "Intended Audience :: Developers", "License :: OSI Approved :: MIT License", "Natural Language :: English", "Programming Language :: Python :: 2", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Programming Language :: Python :: 3.6", "Programming Language :: Python :: 3.7" ], "description": "=========\nOpenOmics\n=========\n\n\n.. image:: https://img.shields.io/pypi/v/OpenOmics.svg\n :target: https://pypi.python.org/pypi/OpenOmics\n\n.. image:: https://img.shields.io/travis/JonnyTran/OpenOmics.svg\n :target: https://travis-ci.org/JonnyTran/OpenOmics\n\n.. image:: https://codecov.io/gh/JonnyTran/OpenOmics/branch/master/graph/badge.svg\n :target: https://codecov.io/gh/JonnyTran/OpenOmics\n\n.. image:: https://readthedocs.org/projects/openomics/badge/?version=latest\n :target: https://openomics.readthedocs.io/en/latest/?badge=latest\n :alt: Documentation Status\n\n.. image:: https://pyup.io/repos/github/JonnyTran/OpenOmics/shield.svg\n :target: https://pyup.io/repos/github/JonnyTran/OpenOmics/\n :alt: Updates\n\n\n\nOpenOmics provides a bioinformatics API and web-app platform integrate, analyze, and visualize the multi-omics and clinical data.\n\n\n* Free software: MIT license\n* Documentation: https://openomics.readthedocs.io.\n\n\nFeatures\n--------\n\n* Provides a bioinformatics workflow to generate integrative results from multi-omics data.\n* Facilitates integration of various bio-databases, multi-omics expression, genomics, and clinical data.\n* Highly flexible to different data types and missing data.\n* Provides researchers with means to consistently store and explore their experimental datasets.\n* Enables scalable performance with parallel computing, while easily configurable to deploy on both single machine and a cluster. (Pending)\n* Usable by both developers and scientists with its intuitive Python API and web-app dashboard interface.\n\nCredits\n-------\n\nThis package was created with Cookiecutter_ and the `pyOpenSci/cookiecutter-pyopensci`_ project template, based off `audreyr/cookiecutter-pypackage`_.\n\n.. _Cookiecutter: https://github.com/audreyr/cookiecutter\n.. _`pyOpenSci/cookiecutter-pyopensci`: https://github.com/pyOpenSci/cookiecutter-pyopensci\n.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage\n\n\n=======\nHistory\n=======\n\n0.8.0 (Pending)\n---------------\n* Replace Pandas Dataframe with Dask DataFrame for parallel processings\n* Build web-app interface for importing user multiomics data files\n\n\n0.7.2 (2019-09-01)\n------------------\n\n* Added compatibility for Python 2.7\n* Refactored ClinicalData\n* Built working documentations with Sphinx on readthedocs\n* Added pytests for MultiOmicsData\n* First successful build on Travis CI on Python 3.4-3.7, 2.7\n\n\n0.6.0 (2019-08-31)\n------------------\n\n* First release on PyPI.\n\n\n", "description_content_type": "", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/JonnyTran/OpenOmics", "keywords": "", "license": "MIT license", "maintainer": "", "maintainer_email": "", "name": "openomics", "package_url": "https://pypi.org/project/openomics/", "platform": "", "project_url": "https://pypi.org/project/openomics/", "project_urls": { "Homepage": "https://github.com/JonnyTran/OpenOmics" }, "release_url": "https://pypi.org/project/openomics/0.7.6/", "requires_dist": [ "numpy", "pandas", "networkx (>=2.1)", "dask", "biopython", "bioservices", "h5py", "dash", "six (==1.10) ; 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