{ "info": { "author": "A. Murat Eren", "author_email": "meren@mbl.edu", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Environment :: Console", "Environment :: Web Environment", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", "Natural Language :: English", "Operating System :: MacOS", "Operating System :: POSIX", "Programming Language :: Python :: 2.7", "Topic :: Scientific/Engineering" ], "description": "Oligotyping\n===============================================================================\n\nOligotyping is a novel supervised computational method to decompose very closely related \ntaxa within microbial communities by utilizing very subtle nucleotide variation\namong 16S Ribosomal RNA gene amplicon reads. It can reveal previously unobserved\necological patterns, and hidden diversity concealed within environmental datasets.\n\nWith oligotyping, depending on the hyper-variable region, similarity threshold\nbetween different types can be as low as 0.2%, more than a magnitude lower than\nde facto 3% similarity threshold that is being used by OTU clustering methods.\n\nFor installation and usage instructions, please see the project web page:\n\n* https://meren.github.io/projects/oligotyping/\n\n\nLicence\n===============================================================================\n\nThis program is free software: you can redistribute it and/or modify\nit under the terms of the GNU General Public License as published by\nthe Free Software Foundation, either version 2 of the License, or\n(at your option) any later version.\n\nThis program is distributed in the hope that it will be useful,\nbut WITHOUT ANY WARRANTY; without even the implied warranty of\nMERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\nGNU General Public License for more details.\n\nYou should have received a copy of the GNU General Public License\nalong with this program. If not, see .\n\n\n\nAuthor\n===============================================================================\n\nI am an assistant research scientist at the [Marine Biological Laboratory](http://mbl.edu), [The Josephine\nBay Paul Center for Comparative Molecular Biology and Evolution](http://jbpc.mbl.edu/), in Woods Hole\nMassachusetts, studying microbial ecology.\n\n\nhttp://meren.org\n", "description_content_type": null, "docs_url": null, "download_url": "UNKNOWN", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://oligotyping.org", "keywords": null, "license": "GPLv3+", "maintainer": null, "maintainer_email": null, "name": "oligotyping", "package_url": "https://pypi.org/project/oligotyping/", "platform": "UNKNOWN", "project_url": "https://pypi.org/project/oligotyping/", "project_urls": { "Download": "UNKNOWN", "Homepage": "http://oligotyping.org" }, "release_url": "https://pypi.org/project/oligotyping/2.1/", "requires_dist": null, 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