{ "info": { "author": "Stefano Pedemonte", "author_email": "stefano.pedemonte@gmail.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 4 - Beta", "Environment :: Other Environment", "Intended Audience :: Science/Research", "License :: OSI Approved :: BSD License", "Operating System :: OS Independent", "Programming Language :: Python", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Scientific/Engineering :: Mathematics", "Topic :: Scientific/Engineering :: Medical Science Apps." ], "description": "============================\nOcciput - Tomographic Vision\n============================\n\nTomographic reconstruction software for PET, PET-MRI and SPECT in 2D, 3D (volumetric) and 4D (spatio-temporal) in Python. \n\nThe software provides high-speed reconstruction using Graphics Processing Units (GPU). \nNote: an NVidia CUDA compatible GPU is required. \n\n``Occiput`` can be utilized with arbitrary scanner geometries. It provides production quality image reconstruction \nwith standard algorithms (such as MLEM and OSEM) and implements advanced algorithms for motion correction, \nkinetic imaging and for multi-modal reconstruction. \n\nThe source code contains Jupyter notebooks with examples. \n\nA Python package implementing the interface to the ``Siemens Biograph mMR`` PET-MRI scanner \nis available upon request and following authorization from Siemens. Please email us at occiput.reconstruction@gmail.com \n\n\nInstallation \n============\n\nLinux, Windows (not tested recently), MacOS\n-------------------------------------------\n\nPre-requisites: ``Occiput`` requires ``NVidia GPU Drivers`, ``NVidia CUDA`` and the ``NiftyRec`` GPU accelerated tomographic ray-tracing library. \n\n1. `Install NVidia GPU Drivers and CUDA `_\n\n2. `Install NiftyRec libraries `_ \n \n3. Make sure that CUDA libraries and NiftyRec libraries are in the system path: \n\n - Linux: \n \n export LD_LIBRARY_PATH:$LD_LIBRARY_PATH:/path_to_cuda_libraries:/path_to_niftyrec_libraries\n \n - MacOS: \n\n export DYLD_LIBRARY_PATH:$DYLD_LIBRARY_PATH:/path_to_cuda_libraries:/path_to_niftyrec_libraries\n\n - Windows: \n\n setx path \"%path%;c:/path_to_cuda_libraries:/path_to_niftyrec_libraries;\"\n\n4. 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