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            "Programming Language :: Python :: 3.6",
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        "description": "# ngsindex\n\nSupport for reading various NGS-related index formats:\n\n* [BAI](https://samtools.github.io/hts-specs/SAMv1.pdf)\n* [TBI](https://samtools.github.io/hts-specs/tabix.pdf)\n* [CSI](https://samtools.github.io/hts-specs/CSIv2.pdf)\n\n# Installation\n\n```bash\npip install ngsindex\n```\n\n# Usage\n\n```python\nfrom ngsindex import IndexType, resolve_index_file, parse_index\nfrom pathlib import Path\n\nbam_file = Path('/path/to/reads.bam')\n\n# Resolve the location of the BAM index file.\nindex_file = resolve_index_file(bam_file, IndexType.BAI)\n\n# Load the index\nindex = parse_index(index_file)\n\n# Loop through chromosome indexes\nfor refidx in index.ref_indexes:\n    ...\n```\n\n# Limitations\n\n* CRAM files are not yet supported (neither .crai nor .bai index files).\n\n# Todo\n\n* Add support for splitting BAI:\n  * https://github.com/samtools/hts-specs/pull/321\n  * https://github.com/tomwhite/hts-specs/blob/sbi/SAMv1.tex",
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