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    "info": {
        "author": "Jeffrey Gill",
        "author_email": "jeffrey.p.gill@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 5 - Production/Stable",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering"
        ],
        "description": "|neurotic logo| neurotic\n========================\n\n*Curate, visualize, annotate, and share your behavioral ephys data using Python*\n\n|PyPI badge| |GitHub badge| |Docs badge| |Build badge| |Coverage badge|\n\nDocumentation_ | `Release Notes`_ | `Issue Tracker`_\n\n**neurotic** is an app for Windows, macOS, and Linux that allows you to easily\nreview and annotate your electrophysiology data and simultaneously captured\nvideo. It is an easy way to load your Neo_-compatible data into ephyviewer_\nwithout doing any programming. Share a single metadata file with your\ncolleagues and they too will quickly be looking at the same datasets!\n\nTo use the app, first organize your datasets in a *metadata file* like this\n(see `Configuring Metadata`_):\n\n.. code-block:: yaml\n\n    my favorite dataset:\n        description: This time it actually worked!\n\n        data_dir:           C:\\local_dir_containing_files\n        remote_data_dir:    http://myserver/remote_dir_containing_downloadable_files  # optional\n        data_file:          data.axgx\n        video_file:         video.mp4\n        # etc\n\n        video_offset: -3.4  # seconds between start of video and data acq\n        epoch_encoder_possible_labels:\n            - label01\n            - label02\n        plots:\n            - channel: I2\n              ylim: [-30, 30]\n            - channel: RN\n              ylim: [-60, 60]\n            # etc\n\n        filters:  # used only if fast loading is off (lazy=False)\n            - channel: Force\n              lowpass: 50\n            # etc\n        amplitude_discriminators:  # used only if fast loading is off (lazy=False)\n            - name: B3 neuron\n              channel: BN2\n              units: uV\n              amplitude: [50, 100]\n            # etc\n\n    another dataset:\n        # etc\n\nOpen your metadata file in **neurotic** and choose a dataset. If the data and\nvideo files aren't already on your local computer, the app can download them\nfor you, even from a password-protected server. Finally, click launch and the\napp will use a standard viewer layout to display your data to you using\nephyviewer_.\n\n|Example screenshot|\n\n*(Pictured above is a voracious Aplysia californica in the act of making the\nresearcher very happy.)*\n\nThe viewers are easy and intuitive to navigate (see `User Interface`_):\n\n- Pressing the play button will scroll through your data and video in real\n  time, or at a higher or lower rate if the speed parameter is changed.\n- The arrow/WASD keys allow you to step through time in variable increments.\n- Jump to a time by clicking on an event in the event list or a table entry in\n  the epoch encoder.\n- To show more or less time at once, right-click and drag right or left to\n  contract or expand time.\n- Scroll the mouse wheel in the trace viewer or video viewer to zoom.\n- The epoch encoder can be used to block out periods of time during which\n  something interesting is happening for later review or further analysis\n  (saved to a CSV file).\n- All panels can be hidden, undocked, stacked, or repositioned on the fly.\n\nElectrophysiologists will find this tool useful even if they don't need the\nvideo synchronization feature!\n\n**Portability is easy with neurotic!** Use relative paths in your metadata file\nalong with a remotely accessible data store such as GIN_ to make your metadata\nfile fully portable. The same metadata file can be copied to a different\ncomputer, and downloaded files will automatically be saved to the right place.\nData stores can be password protected and **neurotic** will prompt you for a\nuser name and password. This makes it easy to share the **neurotic** experience\nwith your colleagues! \u00f0\u0178\u00a4\u00aa\n\nInstallation\n------------\n\n**neurotic** requires Python 3.6 or later. It also needs PyAV_, which is most\neasily installed using conda_::\n\n    conda install -c conda-forge av\n\nPyAV must be installed manually, but all other dependencies will be installed\nwith **neurotic**.\n\nInstall the latest release version of **neurotic** from PyPI_ using ::\n\n    pip install -U neurotic\n\nor install the latest development version from GitHub_ using ::\n\n    pip install -U git+https://github.com/jpgill86/neurotic.git\n\nNote that if you install the development version, you may also need the latest\ndevelopment version of ephyviewer_, which you can get using ::\n\n    pip install -U git+https://github.com/NeuralEnsemble/ephyviewer.git\n\nGetting Started\n---------------\n\nIf you installed **neurotic** into a conda environment, first activate it::\n\n    conda activate <environment name>\n\nLaunch the app from the command line::\n\n    neurotic\n\nA simple example is provided. Select the \"example dataset\", download the\nassociated data (~7 MB), and then click \"Launch\". See `User Interface`_ for\nhelp with navigation.\n\nDisabling \"Fast loading\" before launch will enable additional features\nincluding amplitude-threshold spike detection and signal filtering.\n\nTo inspect the metadata file associated with the example or to make changes to\nit, click \"Edit metadata\". See `Configuring Metadata`_ for details about the\nformat.\n\nIf you prefer Jupyter notebooks, you can launch an example notebook instead for\nexperimenting with **neurotic**'s API::\n\n    neurotic --launch-example-notebook\n\nThe command line interface accepts other arguments too:\n\n.. code-block::\n\n    usage: neurotic [-h] [-V] [--no-lazy] [--thick-traces] [--show-datetime]\n                    [--theme {light,dark,original,printer-friendly}]\n                    [--launch-example-notebook]\n                    [file] [dataset]\n\n    neurotic lets you curate, visualize, annotate, and share your behavioral ephys\n    data.\n\n    positional arguments:\n      file                  the path to a metadata YAML file (default: an example\n                            file)\n      dataset               the name of a dataset in the metadata file to select\n                            initially (default: the first entry in the metadata\n                            file)\n\n    optional arguments:\n      -h, --help            show this help message and exit\n      -V, --version         show program's version number and exit\n      --no-lazy             do not use fast loading (default: use fast loading)\n      --thick-traces        enable support for traces with thick lines, which has\n                            a performance cost (default: disable thick line\n                            support)\n      --show-datetime       display the real-world date and time, which may be\n                            inaccurate depending on file type and acquisition\n                            software (default: do not display)\n      --theme {light,dark,original,printer-friendly}\n                            a color theme for the GUI (default: light)\n      --launch-example-notebook\n                            launch Jupyter with an example notebook instead of\n                            starting the standalone app (other args will be\n                            ignored)\n\n.. |neurotic logo| image:: https://raw.githubusercontent.com/jpgill86/neurotic/master/neurotic/gui/icons/img/neurotic-logo-30.png\n    :alt: Project logo\n\n.. |PyPI badge| image:: https://img.shields.io/pypi/v/neurotic.svg?logo=python&logoColor=white\n    :target: PyPI_\n    :alt: PyPI project\n\n.. |GitHub badge| image:: https://img.shields.io/badge/github-source_code-blue.svg?logo=github&logoColor=white\n    :target: GitHub_\n    :alt: GitHub source code\n\n.. |Docs badge| image:: https://img.shields.io/readthedocs/neurotic/latest.svg?logo=read-the-docs&logoColor=white\n    :target: ReadTheDocs_\n    :alt: Documentation Status\n\n.. |Build badge| image:: https://img.shields.io/travis/com/jpgill86/neurotic/master.svg?logo=travis-ci&logoColor=white\n    :target: Travis_\n    :alt: Build status\n\n.. |Coverage badge| image:: https://coveralls.io/repos/github/jpgill86/neurotic/badge.svg?branch=master\n    :target: Coveralls_\n    :alt: Coverage status\n\n.. |Example screenshot| image:: https://raw.githubusercontent.com/jpgill86/neurotic/master/docs/_static/example-screenshot.png\n    :target: https://raw.githubusercontent.com/jpgill86/neurotic/master/docs/_static/example-screenshot.png\n    :alt: Screenshot\n\n.. _conda:          https://docs.conda.io/projects/conda/en/latest/user-guide/install/\n.. _Configuring Metadata: https://neurotic.readthedocs.io/en/latest/metadata.html\n.. _Coveralls:      https://coveralls.io/github/jpgill86/neurotic?branch=master\n.. _Documentation:  https://neurotic.readthedocs.io/en/latest\n.. _ephyviewer:     https://github.com/NeuralEnsemble/ephyviewer\n.. _GIN:            https://gin.g-node.org\n.. _GitHub:         https://github.com/jpgill86/neurotic\n.. _Issue Tracker:  https://github.com/jpgill86/neurotic/issues\n.. _Neo:            https://github.com/NeuralEnsemble/python-neo\n.. _PyAV:           https://docs.mikeboers.com/pyav/develop/installation.html\n.. _PyPI:           https://pypi.org/project/neurotic\n.. _ReadTheDocs:    https://readthedocs.org/projects/neurotic\n.. _Release Notes:  https://neurotic.readthedocs.io/en/latest/releasenotes.html\n.. _Travis:         https://travis-ci.com/jpgill86/neurotic\n.. _User Interface: https://ephyviewer.readthedocs.io/en/latest/interface.html\n\n\n",
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