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        "author": "Alexandre Savio",
        "author_email": "alexsavio@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Environment :: Console",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: Apache Software License",
            "Natural Language :: English",
            "Operating System :: MacOS",
            "Operating System :: OS Independent",
            "Operating System :: POSIX",
            "Operating System :: Unix",
            "Programming Language :: Python",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Topic :: Scientific/Engineering :: Information Analysis",
            "Topic :: Scientific/Engineering :: Medical Science Apps."
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        "description": "# neuro_pypes\n\n[![Build Status](https://travis-ci.org/Neurita/pypes.svg?branch=master)](https://travis-ci.org/Neurita/pypes)\n[![ReadTheDocs](https://readthedocs.org/projects/neuro-pypes/badge/?version=latest)](http://neuro-pypes.readthedocs.io)\n[![DOI](https://zenodo.org/badge/46623736.svg)](https://zenodo.org/badge/latestdoi/46623736)\n\nReusable neuroimaging pipelines using [nipype](http://nipype.readthedocs.io/) and state-of-the-art\nneuroimaging preprocessing software.\n\nThe objectives of this projects are:\n\n- easy-to-use, complete, reusable, and configurable pre-processing pipelines, and\n- high-quality results with the minimum manual intervention in the images.\n\n\n## Documentation\n\nPlease have a look at the documentation [here](http://neuro-pypes.readthedocs.io).\n\n## Citation\n\nIf you use Pypes please cite it:\n\n```\nAlexandre M. Savio, Michael Schutte, Manuel Gra\u00f1a and Igor Yakushev\nPypes: Workflows for Processing Multimodal Neuroimaging Data\nFront. Neuroinform., April 2017, vol 11, 2017, pages 25\nissn: 1662-5196\ndoi: 10.3389/finf.2017.00025\n```\n[https://doi.org/10.3389/fninf.2017.00025](https://doi.org/10.3389/fninf.2017.00025)\n\n...or the BibTeX:\n```\n@ARTICLE{10.3389/fninf.2017.00025,\nAUTHOR={Savio, Alexandre M. and Schutte, Michael and Gra\u00f1a, Manuel and Yakushev, Igor},\nTITLE={Pypes: Workflows for Processing Multimodal Neuroimaging Data},\nJOURNAL={Frontiers in Neuroinformatics},\nVOLUME={11},\nPAGES={25},\nYEAR={2017},\nURL={http://journal.frontiersin.org/article/10.3389/fninf.2017.00025},\nDOI={10.3389/fninf.2017.00025},\nISSN={1662-5196}\n}\n```\nAlso consider citing [Nipype](http://nipype.readthedocs.io) and all the other open source tools you use.\n\n## License\n\nLicensed under the Apache License, Version 2.0.\n\nChangelog\n=========\n\nVersion 1.1.2 (16.04.2018)\n--------------------------\n\n### Features:\n\n- Add `--extra` parameter to `nitap motion` for extra subject metadata.\n- Bump nipype version to 1.0.2. Few fixes included.\n\n\nVersion 1.1.1 (08.03.2018)\n--------------------------\n\n### Bugfixes:\n\n- Fix wrong import in cli/cli.py file.\n- Fix bugs in `nitap plot` command.\n\n\nVersion 1.1.0 (01.03.2018)\n--------------------------\n\n### Features:\n\n- Add `nitap` CLI with `plot` and `motion` subcommands.\n\n\n### Docs:\n\n- Added a new section for the command line interface.\n\n\n### Code changes:\n\n- Changed all import paths to absolute paths.\n- Line width changed to 120.\n- Many code style changes towards automatised lint checks.\n\n\nVersion 1.0.1\n-------------\n\n- Bug fix: some wrong import names with the module name change.\n- Bug fix: added missing requirements.\n\n\nVersion 1.0.0\n-------------\n\n- API break: Change module name from `pypes` to `neuro_pypes`.\n- Documentation update.\n\n\nVersion 0.3.5\n-------------\n\n- Fix connection naming in the fMRI pipeline atlas output.\n\n\nVersion 0.3.4\n-------------\n\n- Fix connection naming in the fMRI pipeline atlas output.\n\n\nVersion 0.3.3\n-------------\n\n- Fix output renaming in SPM+DiReCT pipeline.\n\n- Add `black_bg` parameter to multi slices plotting functions.\n\n- Add motion_stats_sheet to fmri utils.\n\n- General fix on import ordering which was raising errors from new Nipype.\n\nVersion 0.3.2\n-------------\n\n- Add atlas warping to fMRI pipeline.\n\n- Fixes in fMRI pipeline.\n\nVersion 0.3 - 0.3.1\n-------------------\n- Add motion statistics measures in DTI pipeline.\n\n- Improve documentation.\n\n- Add SPM+DiReCT option to anatomical preprocessing.\n\n- Add `invoke` examples in tasks.py.\n\n- Style and bug fixes.\n\n- Fix imports for latest `nipype` version.\n\n- Add `plot_ortho_slices` function to `nilearn` interface.\n\n\nVersion 0.2.0 - 0.2.1\n---------------------\n- Add mkdocs documentation and readthedocs setup.\n\n- Add registration options for PET and fMRI. Add options for this in config.\n\n- Add group template for fMRI and PET pipelines.\n\n- Add brain_mask output to anatomical MR pipeline.\n\n- Rename/re-structure fMRI pipeline and files.\n\n- Improve PET output file namings.\n\n- Add settings for Camino in config.\n\n- Fix bug in _get_n_slices in slicetime_params.\n\n- Bug fixes.\n",
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