{ "info": { "author": "Applied Brain Research", "author_email": "info@appliedbrainresearch.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 5 - Production/Stable", "Intended Audience :: Science/Research", "License :: Free for non-commercial use", "Operating System :: OS Independent", "Programming Language :: JavaScript", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Topic :: Scientific/Engineering :: Artificial Intelligence" ], "description": "*********\nNengo GUI\n*********\n\nNengo GUI is an HTML5-based interactive visualizer for\nlarge-scale neural models created with\n`Nengo `_.\nThe GUI lets you see the structure of a Nengo model,\nplots spiking activity and decoded representations,\nand enables you to alter inputs\nin real time while the model is running.\n\nRequirements\n============\n\n- Python (tested with Python 2.7 and Python 3.4+)\n- Nengo (which requires NumPy)\n\nInstallation\n============\n\nThe simplest way to install is with the standard Python installation system:\n\n.. code:: shell\n\n pip install nengo-gui\n\nRunning Nengo GUI\n=================\n\nNengo GUI is accessed through a web browser\n(Google Chrome, Firefox, Safari, etc.)\nTo access the correct webpage,\nyou must first start the Nengo GUI server.\nTo do this, open a command line window and run:\n\n.. code:: shell\n\n nengo\n\nIf you specify a file, it will be loaded:\n\n.. code:: shell\n\n nengo myfile.py\n\nAlternatively, you can start the GUI manually from within your code. To\ndo so, add this to the bottom of your file that defines your Nengo model.\n\n.. code:: python\n\n import nengo_gui\n nengo_gui.GUI(__file__).start()\n\nBasic usage\n===========\n\nThe graph of the Nengo network should appear. Rectangles are nodes,\nsets of 5 circles are ensembles, and rounded rectangles are networks.\n\nItems can be dragged to move them and resized by dragging their edge or via\nthe scroll wheel.\n\nTo start (or continue) the simulation, click the play button in the lower\nright. A spinning gear icon indicates the model is in the process of being\nbuilt (or re-built after new graphs are added).\n\nClicking on an item will show a menu of options, depending on what you\nhave clicked on. Here are some of the standard options for network items:\n\n- value: show a graph of the decoded output value over time\n- xy-value: show a state-space plot of two decoded values against each other\n- spikes: show the spiking activity of the nengo.Ensemble\n- slider: show sliders that let you adjust the value in a nengo.Node\n- expand/collapse: reveal or hide the insides of a nengo.Network\n\nOnce you have graphs, you can also click on them to adjust their options. For\nexample:\n\n- set range: adjust the limits of the graph\n- show label/hide label: whether to show the title at the top of the graph\n- remove: get rid of the graph\n\nThe graphs record their data from previous time steps. You can show this\nprevious data by dragging the transparent area in the time axis at the\nbottom (beside the play button).\n\nContributing\n============\n\nWe welcome contributions to Nengo GUI through issues and pull requests!\nHowever, we require contributor assignment agreements\nbefore pull requests are merged.\nSee the ``CONTRIBUTORS.rst`` and ``LICENSE.rst`` files for more information.\n\nDeveloper installation\n----------------------\n\nDevelopers should install Nengo GUI like so:\n\n.. code:: shell\n\n git clone https://github.com/nengo/nengo-gui\n cd nengo-gui\n python setup.py develop --user\n\nChanges to the files in the ``nengo-gui`` directory will be\nreflected the next time the GUI is run or imported.\n\nRunning unit tests\n------------------\n\nTesting is done with the help of `Selenium `_.\nTesting is currently only supported on Linux and Mac OS X.\n\nTo run the tests, make sure you have a recent version of Firefox.\nMac users should ensure that Firefox is in the applications folder.\n\nAdditional dependencies are required for running unit tests.\nTo install them, open a terminal and navigate to the ``nengo-gui`` folder.\nExecute the command\n\n.. code:: shell\n\n pip install --user -r requirements-test.txt\n\nIf you are using a virtual environment,\nyou can omit the ``--user`` flag.\n\nAt this point selenium and pytest should be installed,\nso you are ready to run the tests.\n\nTo run the tests:\n\n1. Open a terminal window and start the ``nengo`` server.\n2. Open a second terminal window.\n3. Navigate to the ``nengo-gui`` directory.\n4. Run ``py.test``.\n\nThe console should say some number of tests are found,\nand Firefox will launch and start doing things on its own.\nIt may takes a few minutes to run all tests.\n\nWriting new unit tests\n----------------------\n\nTo create tests, simply save a file named\n``test_whatever_the_test_concerns.py`` in ``nengo_gui/tests``\nSee ``nengo_gui/tests/test_example.py`` for examples tests.\n\nThe following references may also be helpful.\n\n- `Selenium-Python documentation `_\n- `pytest documentation `_\n\n***************\nRelease History\n***************\n\n.. Changelog entries should follow this format:\n\n version (release date)\n ======================\n\n **section**\n\n - One-line description of change (link to Github issue/PR)\n\n.. Changes should be organized in one of several sections:\n\n - API changes\n - Improvements\n - Behavioural changes\n - Bugfixes\n - Documentation\n\n0.4.4 (June 9, 2019)\n====================\n\n- API change: Added backend to InlineGUI constructor.\n- Improvement (Experimental): Added simulator hooks\n- Improvement: Added audible spike sounds\n- Improvement (Experimental): Nodes have access to the GUI keyboard state\n- Improvement: support for nengo-bio Connections\n- Improvement: show multiple connections between objects\n- Bugfix: handle new Connection transform in Nengo 3.0.0\n- Bugfix: escape labels so they aren't treated as HTML\n- Improvement: reworked networking to allow clean integration with Jupyter\n\n0.4.3 (June 28, 2018)\n=====================\n\n- Bugfix: thread-safety for jedi autocompletion\n- Bugfix: Handle authentication when connecting to multiple servers\n- Bugfix: Fail gracefully when binding server\n\n0.4.2 (June 8, 2018)\n====================\n\n- Bugfix: Cloud plots for nengo_spa.Transcode plots no longer fail\n\n\n0.4.1 (June 5, 2018)\n====================\n\n- Bugfix: File menu no longer has an incorrect height\n- Bugfix: SPA plots for nengo_spa are now created correctly\n\n0.4.0 (June 1, 2018)\n====================\n\n- Added build progress indicator\n- Added status bar\n- Pan view with CTRL/MMB\n- Support for nengo_spa\n- Added --browser option\n- Added --unsecure option\n- Fixed backspace not working on sliders, search box\n- Added autocomplete to text editor\n- Added visual depiction of modulatory and inhibitory connections\n- Token-based authentication\n- Dual-stack IPv4/IPv6 support\n\n0.3.1 (October 17, 2017)\n========================\n\n- Improved some error messages.\n- Fixed an issue with Safari compatibility.\n\n0.3.0 (February 22, 2017)\n=========================\n\nThis release is compatible with Nengo 2.1.0 and later.\n\n- Added ability to set number of neurons in raster plots.\n- Added ability to adjust synaptic filter on value plots.\n- Rewritten server implementation for robustness and compatibility.\n- Added tutorial files for \"How to Build a Brain\" book.\n- Improved Selenium testing.\n- Removed randomness in auto-layout algorithm.\n- Better handling of messaging errors.\n- Added red save icon indicator of a failed save.\n- Added a \"Help\" link to https://forum.nengo.ai\n- Removed seed changes due to creation of plots.\n\n0.2.0 (April 28, 2016)\n======================\n\nThis release is compatible with Nengo 2.1.0.\n\n- The network graph can now be exported to SVG for inclusion in publications.\n- Simulation data can now be exported to CSV for later analysis.\n- The simulation will now automatically slow down to real time by default.\n The speed can be controlled with a new slider in the bottom left.\n- Clicking on the file name allows you to save the model to a different file.\n- Configuration now persists when the browser is closed and reopened.\n- Value plots can now have a legend.\n- Added a unit testing system.\n- Optimized several parts of the code, which improved speed and responsiveness.\n- Many other bug fixes and look-and-feel improvements.\n\n0.1.5 (November 3, 2015)\n========================\n\n- Added a set of tutorials to the built-in examples.\n- Added cross-hairs when hovering over plots.\n- Added several new types of plots, including a firing pattern plot,\n a similarity plot for SPA networks, and a plot for ``Compare`` networks.\n- Added the ability to implement custom HTML plots.\n See the built-in example ``basics/html.py``.\n- Extended SPA override capabilities to all SPA networks.\n- ``nengo_gui.Viz`` has been renamed to ``nengo_gui.GUI``.\n- Major refactoring of back-end code.\n- Many bug fixes and look-and-feel improvements.\n\n0.1.4 (June 16, 2015)\n=====================\n\n- Spike rasters are now much faster.\n- Added a reset button that restarts a simulation.\n- Code editor now has a border, making it easier to resize.\n- Can now search in the code editor (with Ctrl+f).\n- When an error occurs in a model, a console will display with error details.\n Printed values also show up in this console, for easier debugging.\n- Can now import from other files in the same directory as a Nengo model.\n- Readonly files are handled safely, instead of crashing.\n- Several minor aestheic improvements and bug fixes.\n\n0.1.3 (June 10, 2015)\n=====================\n\n- Fixed another Python 3 compatibility issue with autolayouts.\n- Fixed a bug that could cause a crash when reloading config files.\n\n0.1.2 (June 9, 2015)\n====================\n\n- Fixed a Python 3 compatibility issue with semantic pointer graphs.\n\n0.1.1 (June 8, 2015)\n====================\n\n- A large number of stability and user experience fixes.\n The first release was a bit buggy, but this should be pretty stable.\n- Includes many more examples out of the box.\n\n0.1.0 (June 5, 2015)\n====================\n\nInitial release of Nengo GUI!\nThanks to all of the contributors for 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