{ "info": { "author": "Christian O'Reilly, Pierre-Alexandre Fonta", "author_email": "christian.oreilly@epfl.ch, pierre-alexandre.fonta@epfl.ch", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Intended Audience :: Developers", "Intended Audience :: Science/Research", "License :: Free for non-commercial use", "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", "Natural Language :: English", "Operating System :: MacOS", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX :: Linux", "Programming Language :: Python :: 3 :: Only", "Topic :: Scientific/Engineering", "Topic :: Software Development :: Libraries :: Python Modules" ], "description": "[Getting Started](#getting-started) |\n[Releases](#releases) |\n[Status](#status)\n\n# NeuroAnnotation Toolbox (NAT)\n\nPython module to use the annotations created with\n[NeuroCurator](https://github.com/BlueBrain/neurocurator), for example in a\n[Jupyter](https://jupyter.org/) notebook.\n\nThis framework has been described in details in the following open-access\npaper: https://doi.org/10.3389/fninf.2017.00027.\n\nNAT provides the necessary functions and utilities to:\n- reliably annotate the neuroscientific literature,\n- curate published values for modeling parameters,\n- save them in reusable corpora.\n\n---\n\n## Getting Started\n\n**Requirements:**\n\nSystem side:\n\n- [Git 1.7.0+](https://git-scm.com/downloads)\n- [ImageMagick 6](http://docs.wand-py.org/en/latest/guide/install.html)\n\nPython side:\n\n- [Beautiful Soup 4](https://www.crummy.com/software/BeautifulSoup/)\n- [GitPython](https://gitpython.readthedocs.io)\n- [lxml](http://lxml.de)\n- [NumPy](http://www.numpy.org)\n- [pandas](https://pandas.pydata.org)\n- [parse](https://pypi.python.org/pypi/parse)\n- [Pyzotero](https://pyzotero.readthedocs.io)\n- [quantities](https://python-quantities.readthedocs.io)\n- [SciPy](https://www.scipy.org/scipylib/index.html)\n- [Wand](http://docs.wand-py.org)\n\n**Installation:**\n\n```bash\npip install nat\n```\n\n## Releases\n\nVersions and their notable changes are listed in the\n[releases section](https://github.com/BlueBrain/nat/releases/).\n\nReleases are synchronized with the ones of NeuroCurator.\n\n## Status\n\nCreated during 2016.\n\nOngoing stabilization and reengineering in the branch _refactor-architecture_.\n\nThe branch _refactor-architecture_ is **not** intended to be used by end-users.\n\nNew features, bug fixes and improvements are done on the reengineered code sections.\n\nWhen a reengineered code section is stable, it's merged into the branch\n_master_ and a release is published.\n\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/BlueBrain/nat", "keywords": "neuroscience annotation curation literature modeling parameters", "license": "GPLv3", 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