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    "info": {
        "author": "Andrey Smelter",
        "author_email": "andrey.smelter@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Environment :: Console",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: BSD License",
            "Operating System :: OS Independent",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
            "Topic :: Software Development :: Libraries :: Python Modules"
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        "description": "mwtab\n=====\n\n.. image:: https://img.shields.io/pypi/l/mwtab.svg\n   :target: https://choosealicense.com/licenses/bsd-3-clause-clear/\n   :alt: License information\n\n.. image:: https://img.shields.io/pypi/v/mwtab.svg\n   :target: https://pypi.org/project/mwtab\n   :alt: Current library version\n\n.. image:: https://img.shields.io/pypi/pyversions/mwtab.svg\n   :target: https://pypi.org/project/mwtab\n   :alt: Supported Python versions\n\n.. image:: https://readthedocs.org/projects/nmrstarlib/badge/?version=latest\n   :target: http://mwtab.readthedocs.io/en/latest/?badge=latest\n   :alt: Documentation status\n\n.. image:: https://api.travis-ci.org/MoseleyBioinformaticsLab/mwtab.svg?branch=master\n   :target: https://travis-ci.org/MoseleyBioinformaticsLab/mwtab\n   :alt: Travis CI status\n\n.. image:: https://codecov.io/gh/MoseleyBioinformaticsLab/mwtab/branch/master/graphs/badge.svg?branch=master\n   :target: https://codecov.io/gh/MoseleyBioinformaticsLab/mwtab\n   :alt: Code coverage information\n\n.. image:: https://img.shields.io/badge/DOI-10.1007%2Fs11306--018--1356--6-blue.svg\n   :target: http://dx.doi.org/10.1007/s11306-018-1356-6\n   :alt: Citation link\n\n|\n\n.. image:: https://raw.githubusercontent.com/MoseleyBioinformaticsLab/mwtab/master/docs/_static/images/mwtab_logo.png\n   :width: 50%\n   :align: center\n   :target: http://mwtab.readthedocs.io/\n\n\nThe ``mwtab`` package is a Python library that facilitates reading and writing\nfiles in ``mwTab`` format used by the `Metabolomics Workbench`_ for archival of\nMass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.\n\nThe ``mwtab`` package provides facilities to convert ``mwTab`` formatted files into\ntheir equivalent ``JSON`` ized representation and vice versa.  ``JSON`` stands for JavaScript\nObject Notation, an open-standard format that uses human-readable text to transmit\ndata objects consisting of attribute-value pairs.\n\nThe ``mwtab`` package can be used in several ways:\n\n   * As a library for accessing and manipulating data stored in ``mwTab`` format files.\n   * As a command-line tool to convert between ``mwTab`` format and its equivalent\n     ``JSON`` representation.\n\n\nCitation\n~~~~~~~~\n\nWhen using ``mwtab`` package in published work, please cite the following paper:\n\n   * Smelter, Andrey and Hunter NB Moseley. \"A Python library for FAIRer access and\n     deposition to the Metabolomics Workbench Data Repository.\"\n     *Metabolomics* 2018, 14(5): 64. doi: `10.1007/s11306-018-1356-6`_.\n\n\nLinks\n~~~~~\n\n   * mwtab @ GitHub_\n   * mwtab @ PyPI_\n   * Documentation @ ReadTheDocs_\n\n\nInstallation\n~~~~~~~~~~~~\n\nThe ``mwtab`` package runs under Python 2.7 and Python 3.4+. Use pip_ to install.\nStarting with Python 3.4, pip_ is included by default.\n\n\nInstall on Linux, Mac OS X\n--------------------------\n\n.. code:: bash\n\n   python3 -m pip install mwtab\n\n\nInstall on Windows\n------------------\n\n.. code:: bash\n\n   py -3 -m pip install mwtab\n\n\nUpgrade on Linux, Mac OS X\n--------------------------\n\n.. code:: bash\n\n   python3 -m pip install mwtab --upgrade\n\n\nUpgrade on Windows\n------------------\n\n.. code:: bash\n\n   py -3 -m pip install mwtab --upgrade\n\n\nQuickstart\n~~~~~~~~~~\n\n.. code:: python\n\n   >>> import mwtab\n   >>>\n   >>> # Here we use ANALYSIS_ID of file to fetch data from URL\n   >>> for mwfile in mwtab.read_files(\"1\", \"2\"):\n   ...      print(\"STUDY_ID:\", mwfile.study_id)\n   ...      print(\"ANALYSIS_ID:\", mwfile.analysis_id)\n   ...      print(\"SOURCE:\", mwfile.source)\n   ...      print(\"Blocks:\", list(mwfile.keys()))\n   >>>\n\n\n.. image:: https://raw.githubusercontent.com/MoseleyBioinformaticsLab/mwtab/master/docs/_static/images/mwtab_demo.gif\n   :align: center\n\n\n.. note:: Read the User Guide and the ``mwtab`` Tutorial on ReadTheDocs_\n          to learn more and to see code examples on using the ``mwtab`` as a\n          library and as a command-line tool.\n\n\nFile Formatting Issues\n~~~~~~~~~~~~~~~~~~~~~~\n\nCurrently there are 5 files that are failing to parse due to formatting issues\nwithin them:\n\n   * ST000258_AN000410.txt\n\n      - extra tab character on line 360 ('MS_ALL_DATA:UNITS   \\t\\t')\n\n   * ST000365_AN000598.txt\n\n      - ST:EMAIL line is broken on line 53, 54 ('ST:EMAIL            \\n@unc.edu')\n      - extra tab on line 155 ('NMR_BINNED_DATA:UNITS\\tppm\\t')\n\n   * ST000445_AN000696.txt\n\n      - extra tab character on line 135 ('CH:CHROMATOGRAPHY_SUMMARY     \\t\\tThe gradient composition was changed linearly from 50% to 100% solvent B')\n\n   * ST000901_AN001467.txt\n\n      - extra tab character on lines 61-78  ('SP:SAMPLEPREP_SUMMARY            \\tPreparation of SPE on vacuum manifold: 1.\\tClean 60 mg Oasis HLB (Waters) spe ...')\n\n   * ST000902_AN001468.txt\n\n      - Header line is broken into two lines on lines 1-2 ('#METABOLOMICS WORKBENCH hover_20170726_173354 DATATRACK_ID:1171\\n STUDY_ID:ST000902 ANALYSIS_ID:AN001468')\n\n\nLicense\n~~~~~~~\n\nThis package is distributed under the BSD_ `license`.\n\n\n.. _Metabolomics Workbench: http://www.metabolomicsworkbench.org\n.. _GitHub: https://github.com/MoseleyBioinformaticsLab/mwtab\n.. _ReadTheDocs: http://mwtab.readthedocs.io\n.. _PyPI: https://pypi.org/project/mwtab\n.. _pip: https://pip.pypa.io\n.. _BSD: https://choosealicense.com/licenses/bsd-3-clause-clear/\n.. _10.1007/s11306-018-1356-6: http://dx.doi.org/10.1007/s11306-018-1356-6",
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