{
    "info": {
        "author": "ryought",
        "author_email": "ryonakabayashi@gmail.com",
        "bugtrack_url": null,
        "classifiers": [],
        "description": "# mummer-idotplot\nGenerate interactive dotplot from MUMmer4 output using plotly\n\n## Installation\n```\n$ pip install mummer-idotplot\n```\n`plotly` is required to install.\n\n## Usage\n\nWhen aligning two sequences with MUMmer4, you should set an option `-F`(force 4 column output format) and `-L`(show length of query). Also, you should not use `-c` option, which change output position of match starting position and have bugs.\n\nSo for example:\nIf you have `chr1, chr2` in `reference.fasta`, and `contig1, contig2` in `query.fasta`\n```\n$ mummer -maxmatch -F -L -b -l 10 reference.fasta query.fasta > output.mum\n$ mummer-idotplot output.mum output.html --ref chr1 chr2 --query contig1 contig2\n$ mummer-idotplot output.mum output.html --ref chr1:0:50000 chr2:100:20000 --query contig1 contig2  # you can specify the region to plot\n$ open output.html  # you'll see dotplot in your browser\n```",
        "description_content_type": "text/markdown",
        "docs_url": null,
        "download_url": "",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "https://github.com/ryought/mummer-idotplot",
        "keywords": "",
        "license": "MIT",
        "maintainer": "",
        "maintainer_email": "",
        "name": "mummer-idotplot",
        "package_url": "https://pypi.org/project/mummer-idotplot/",
        "platform": "",
        "project_url": "https://pypi.org/project/mummer-idotplot/",
        "project_urls": {
            "Homepage": "https://github.com/ryought/mummer-idotplot"
        },
        "release_url": "https://pypi.org/project/mummer-idotplot/0.1.3/",
        "requires_dist": null,
        "requires_python": "",
        "summary": "Generate interactive dotplot from MUMmer4 output using plotly",
        "version": "0.1.3"
    },
    "last_serial": 5325368,
    "releases": {
        "0.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "a3156ff5a96b264340a8ffe46308ecad",
                    "sha256": "a05d2954293becf3bbe7a3bdbb5ff356bef8f68693ff417f871c33e3a5bc020c"
                },
                "downloads": -1,
                "filename": "mummer-idotplot-0.1.tar.gz",
                "has_sig": false,
                "md5_digest": "a3156ff5a96b264340a8ffe46308ecad",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 2532,
                "upload_time": "2019-05-23T04:50:42",
                "url": "https://files.pythonhosted.org/packages/ba/49/a1fbe164129ff8c5ab23ed5e6b94b8a3466a4fe752da710ee718e73d0989/mummer-idotplot-0.1.tar.gz"
            }
        ],
        "0.1.2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "4091508e329cdd271d8572f60334bf0b",
                    "sha256": "994e3bab387919fbd852781e86405c63b585a88b57f8128e5dca7d6ce871a486"
                },
                "downloads": -1,
                "filename": "mummer-idotplot-0.1.2.tar.gz",
                "has_sig": false,
                "md5_digest": "4091508e329cdd271d8572f60334bf0b",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 2815,
                "upload_time": "2019-05-23T05:02:28",
                "url": "https://files.pythonhosted.org/packages/e4/ec/dd7b2ece1778241d2ae08146de13255105976aa7cc975bd844dac19930bd/mummer-idotplot-0.1.2.tar.gz"
            }
        ],
        "0.1.3": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "3893896a2280ba82026f4d33c55524a4",
                    "sha256": "da20394c299370a63dc8e3705f1a86cdb366dc3a6757becbacf35c2c0b78dd98"
                },
                "downloads": -1,
                "filename": "mummer-idotplot-0.1.3.tar.gz",
                "has_sig": false,
                "md5_digest": "3893896a2280ba82026f4d33c55524a4",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 3313,
                "upload_time": "2019-05-28T06:50:57",
                "url": "https://files.pythonhosted.org/packages/0f/a6/b76644d0b393fd969b174f5d85df2c124ca281fb70230f33d034d076200b/mummer-idotplot-0.1.3.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "3893896a2280ba82026f4d33c55524a4",
                "sha256": "da20394c299370a63dc8e3705f1a86cdb366dc3a6757becbacf35c2c0b78dd98"
            },
            "downloads": -1,
            "filename": "mummer-idotplot-0.1.3.tar.gz",
            "has_sig": false,
            "md5_digest": "3893896a2280ba82026f4d33c55524a4",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 3313,
            "upload_time": "2019-05-28T06:50:57",
            "url": "https://files.pythonhosted.org/packages/0f/a6/b76644d0b393fd969b174f5d85df2c124ca281fb70230f33d034d076200b/mummer-idotplot-0.1.3.tar.gz"
        }
    ]
}