{ "info": { "author": "Sven Fillinger", "author_email": "sven.fillinger@qbic.uni-tuebingen.de", "bugtrack_url": null, "classifiers": [ "Intended Audience :: Developers", "License :: OSI Approved :: MIT License", "Programming Language :: Python", "Programming Language :: Python :: 3.4", "Programming Language :: Python :: 3.5", "Topic :: Scientific/Engineering :: Bio-Informatics", "Topic :: Software Development :: Libraries :: Python Modules" ], "description": "About this module\n=================\nThis Python module was designed to provide a simple parser for different diagnostic variant information data.\n\nHow to use the SnvParser class\n==============================\n\nParsing a SNV file following the formats described above is fairly simple. Just create an ``SnvParser`` object with the path to the ``tsv``-file and specify its type by providing the correct header (``SSnvHeader, GSnvHeader, ...``).\n\n.. code-block:: python\n \n from mtbparser.snv_parser import SnvParser\n from mtbparser.snv_utils import SSnvHeader\n\n # Path to a valid SNV tsv file, as specified in\n # the file format documentation.\n somatic_snv_file = \"/path/to/mySSnv.tsv\"\n\n # Create parser object for somatic SNVs\n parser = SnvParser(somatic_snv_file, SSnvHeader)\n\n # Iterate through parsed SNV items and get the gene name\n for snv_item in parser.getSNVs():\n print(snv_item.get_snv_info(SSnvHeader.GENE.name))\n\n \nDetailed documentation\n======================\n\nA more detailed documentation can be found on `Github `_.\n \n", "description_content_type": null, "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/qbicsoftware/qbic.mtbparser", "keywords": "", 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