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        "author": "Carlos Xavier Hern\u00e1ndez",
        "author_email": "cxh@stanford.edu",
        "bugtrack_url": null,
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            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Operating System :: MacOS",
            "Operating System :: Microsoft :: Windows",
            "Operating System :: Unix",
            "Programming Language :: Python",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Topic :: Scientific/Engineering"
        ],
        "description": "b'MSMExplorer: data visualizations for biomolecular dynamics'\nb'=========================================================='\nb''\nb'|Build Status| |Build status| |Coverage Status| |PyPI version| |License|'\nb'|Documentation| |DOI|'\nb''\nb'.. raw:: html'\nb''\nb'   <div class=\"row\">'\nb''\nb'.. raw:: html'\nb''\nb'   </div>'\nb''\nb'MSMExplorer is a Python visualization library for statistical models of'\nb'biomolecular dynamics. It provides a high-level interface for drawing'\nb'attractive statistical graphics with'\nb'`MSMBuilder <http://msmbuilder.org>`__.'\nb''\nb'Documentation'\nb'-------------'\nb''\nb'Online documentation is available'\nb'`here <http://msmbuilder.org/msmexplorer/>`__. It includes IPython'\nb'notebooks, detailed API documentation, and other useful info.'\nb''\nb'There are docs for the development version'\nb'`here <http://msmbuilder.org/msmexplorer/development>`__. These should'\nb'correspond with the github master branch.'\nb''\nb'Examples'\nb'--------'\nb''\nb'.. code:: python'\nb''\nb'    from msmbuilder.example_datasets import FsPeptide'\nb'    from msmbuilder.featurizer import RMSDFeaturizer'\nb''\nb'    import msmexplorer as msme'\nb''\nb'    # Load Fs Peptide Data'\nb'    traj = FsPeptide().get().trajectories[0]'\nb''\nb'    # Calculate RMSD'\nb'    featurizer = RMSDFeaturizer(reference_traj=traj[0])'\nb'    rmsd = featurizer.partial_transform(traj).flatten()'\nb''\nb'    # Plot Trace'\nb\"    msme.plot_trace(rmsd, label='traj0', xlabel='Timestep', ylabel='RMSD (nm)')\"\nb''\nb'.. figure:: http://msmbuilder.org/msmexplorer/development/_images/plot_trace.png'\nb'   :alt: '\nb''\nb'The documentation has an `example'\nb'gallery <http://msmbuilder.org/msmexplorer/development/examples/>`__'\nb'with short scripts showing how to use different parts of the package.'\nb''\nb'Dependencies'\nb'------------'\nb''\nb'-  Python 3.4+'\nb''\nb'Mandatory'\nb'~~~~~~~~~'\nb''\nb'The latest versions of the following packages are required:'\nb''\nb'-  `numpy <http://www.numpy.org/>`__'\nb''\nb'-  `scipy <http://www.scipy.org/>`__'\nb''\nb'-  `matplotlib <matplotlib.sourceforge.net>`__'\nb''\nb'-  `networkx <https://networkx.github.io/>`__'\nb''\nb'-  `pandas <http://pandas.pydata.org/>`__'\nb''\nb'-  `seaborn <https://stanford.edu/~mwaskom/software/seaborn/>`__'\nb''\nb'-  `statsmodels <http://statsmodels.sourceforge.net/devel/>`__'\nb''\nb'-  `corner <http://corner.readthedocs.io/en/latest/>`__'\nb''\nb'-  `mdtraj <https://mdtraj.org/>`__'\nb''\nb'-  `msmbuilder <https://msmbuilder.org>`__'\nb''\nb'Installation'\nb'------------'\nb''\nb'The preferred installation mechanism for ``msmexplorer`` is with'\nb'``conda``:'\nb''\nb'.. code:: bash'\nb''\nb'    $ conda install -c omnia msmexplorer'\nb''\nb\"If you don't have conda, or are new to scientific python, we recommend\"\nb'that you download the `Anaconda scientific python'\nb'distribution <https://store.continuum.io/cshop/anaconda/>`__.'\nb''\nb'To install from PyPI, just do:'\nb''\nb'::'\nb''\nb'    pip install msmexplorer'\nb''\nb'You may instead want to use the development version from Github, by'\nb'running'\nb''\nb'::'\nb''\nb'    pip install git+git://github.com/msmexplorer/msmexplorer.git#egg=msmexplorer'\nb''\nb'Development'\nb'-----------'\nb''\nb'All development happens here, on'\nb'`Github <https://github.com/msmexplorer/msmexplorer>`__.'\nb''\nb\"If you're interested in contributing to MSMExplorer, please refer to our\"\nb'`Contributing <http://msmbuilder.org/msmexplorer/development/contributing.html>`__'\nb'guide.'\nb''\nb'Support'\nb'-------'\nb''\nb'Please'\nb'`submit <https://github.com/msmexplorer/msmexplorer/issues/new>`__ any'\nb'bugs or questions to the Github issue tracker.'\nb''\nb'License'\nb'-------'\nb''\nb'Released under a MIT license'\nb''\nb'Citing'\nb'------'\nb''\nb'.. code:: bibtex'\nb''\nb'    @misc{msmexplorer,'\nb\"      author       = {Hern{\\\\'{a}}ndez, Carlos and\"\nb'                      Harrigan, Matthew and'\nb'                      Pande, Vijay},'\nb'      title        = {msmexplorer/msmexplorer: MSMExplorer 0.3},'\nb'      month        = oct,'\nb'      year         = 2016,'\nb'      doi          = {10.5281/zenodo.162942},'\nb'      url          = {https://doi.org/10.5281/zenodo.162942}'\nb'    }'\nb''\nb'.. |Build Status| image:: https://travis-ci.org/msmexplorer/msmexplorer.svg?branch=master'\nb'   :target: https://travis-ci.org/msmexplorer/msmexplorer'\nb'.. |Build status| image:: https://ci.appveyor.com/api/projects/status/038hirce0vlx2847?svg=true'\nb'   :target: https://ci.appveyor.com/project/cxhernandez/msmexplorer'\nb'.. |Coverage Status| image:: https://coveralls.io/repos/github/msmexplorer/msmexplorer/badge.svg?branch=master'\nb'   :target: https://coveralls.io/github/msmexplorer/msmexplorer?branch=master'\nb'.. |PyPI version| image:: https://badge.fury.io/py/msmexplorer.svg'\nb'   :target: http://badge.fury.io/py/msmexplorer'\nb'.. |License| image:: https://img.shields.io/badge/license-MIT-red.svg?style=flat'\nb'   :target: https://opensource.org/licenses/MIT'\nb'.. |Documentation| image:: https://img.shields.io/badge/docs-latest-blue.svg?style=flat'\nb'   :target: http://msmbuilder.org/msmexplorer/'\nb'.. |DOI| image:: https://zenodo.org/badge/47228682.svg'\nb'   :target: https://zenodo.org/badge/latestdoi/47228682'\nb''",
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