{ "info": { "author": "Guanliang Meng", "author_email": "mengguanliang@genomics.cn", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Intended Audience :: Science/Research", "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", "Operating System :: MacOS :: MacOS X", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX :: Linux", "Programming Language :: Python :: 3", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "# msaconverter\n\n## 1 Introduction\n\n`msaconverter` is a tool to convert a multiple sequence alignment into different format with `Biopython` (http://www.biopython.org/)\n\n## 2 Installation\n\n pip install msaconverter\n\nThere will be a command `msaconverter` created under the same directory as your `pip` command.\n\n## 3 Usage\n\n $ msaconverter\n usage: msaconverter.py [-h] [-i ] [-o ]\n [-p {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}]\n [-q {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}]\n\n Convert multiple-sequence-alignment into different formats. See\n https://biopython.org/wiki/AlignIO for format introductions. By Guanliang\n MENG.\n\n optional arguments:\n -h, --help show this help message and exit\n -i input msa file\n -o output msa file\n -p {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}\n input msa format [fasta]\n -q {fasta,clustal,stockholm,nexus,phylip,phylip-sequential,phylip-relaxed,mauve,maf}\n input msa format [phylip-relaxed]\n\n\n## Author\nGuanliang MENG\n\n## Citation\nCurrently I have no plan to publish `msaconverter`.\n\nHowever, since `msaconverter` makes use of `Biopython`, you should cite it if you use `msaconverter` in your work:\n\n Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon: \u201cBiopython: freely available Python tools for computational molecular biology and bioinformatics\u201d. Bioinformatics 25 (11), 1422\u20131423 (2009). https://doi.org/10.1093/bioinformatics/btp163\n\nPlease go to `http://www.biopython.org/` for more details.", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://mengguanliang.com", "keywords": "", "license": "", "maintainer": "", "maintainer_email": "", "name": "msaconverter", "package_url": "https://pypi.org/project/msaconverter/", "platform": "", "project_url": "https://pypi.org/project/msaconverter/", "project_urls": { "Homepage": "http://mengguanliang.com" }, "release_url": "https://pypi.org/project/msaconverter/0.0.1/", "requires_dist": null, "requires_python": ">=3", "summary": "To convert multiple alignment sequences (msa) to different format", "version": "0.0.1" }, "last_serial": 4099531, "releases": { "0.0.1": [ { "comment_text": "", "digests": { "md5": "d9dec93475e09c041c0616c967ca61ca", "sha256": "77a475e25e3cc56320a117cdee3bb0d0316ed6cf46e682cd1e448557d6be6a31" }, "downloads": -1, "filename": "msaconverter-0.0.1.tar.gz", "has_sig": false, "md5_digest": "d9dec93475e09c041c0616c967ca61ca", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3", "size": 16102, "upload_time": "2018-07-25T06:22:08", "url": "https://files.pythonhosted.org/packages/fd/7e/30a2a0beb303d41a383ad3f0c1d8c0692521fd8d26ffc67a1984747cc667/msaconverter-0.0.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "d9dec93475e09c041c0616c967ca61ca", "sha256": "77a475e25e3cc56320a117cdee3bb0d0316ed6cf46e682cd1e448557d6be6a31" }, "downloads": -1, "filename": "msaconverter-0.0.1.tar.gz", "has_sig": false, "md5_digest": "d9dec93475e09c041c0616c967ca61ca", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3", "size": 16102, "upload_time": "2018-07-25T06:22:08", "url": "https://files.pythonhosted.org/packages/fd/7e/30a2a0beb303d41a383ad3f0c1d8c0692521fd8d26ffc67a1984747cc667/msaconverter-0.0.1.tar.gz" } ] }