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        "author": "Rudolph Pienaar",
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        "description": "pl-mri10yr06mo01da_normal\n================================\n\n.. image:: https://badge.fury.io/py/mri10yr06mo01da_normal.svg\n    :target: https://badge.fury.io/py/mri10yr06mo01da_normal\n\n.. image:: https://travis-ci.org/FNNDSC/mri10yr06mo01da_normal.svg?branch=master\n    :target: https://travis-ci.org/FNNDSC/mri10yr06mo01da_normal\n\n.. image:: https://img.shields.io/badge/python-3.5%2B-blue.svg\n    :target: https://badge.fury.io/py/pl-mri10yr06mo01da_normal\n\n.. contents:: Table of Contents\n\n\nAbstract\n--------\n\nThis application simply copies from embedded data a reference normal anonymized MRI of a subject aged 10 years, 06 months, 01 days.\n\nSynopsis\n--------\n\n.. code::\n\n    mri10yr06mo01da_normal.python                                   \\\n        [-v <level>] [--verbosity <level>]                          \\\n        [--version]                                                 \\\n        [--man]                                                     \\\n        [--meta]                                                    \\\n        [--dir <dir>]                                               \\\n        [--splash <splash>]                                         \\\n        <outputDir>\n\nArguments\n---------\n\n.. code::\n\n    [-v <level>] [--verbosity <level>]\n    Verbosity level for app. Not used currently.\n\n    [--version]\n    If specified, print version number.\n\n    [--man]\n    If specified, print this man page.\n\n    [--meta]\n    If specified, print plugin meta data.\n\n    [--splash <splash>]\n    An optional splash message to print on startup.\n\n    [--dir <dir>]\n    An optional override directory to copy to the <outputDir>.\n    Note, if run from a containerized version, this will copy \n    a directory from the *container* file system.\n\nRun\n----\n\nThis ``plugin`` can be run in two modes: natively as a python package or as a containerized docker image.\n\nUsing PyPI\n~~~~~~~~~~\n\nTo run from PyPI, simply do a \n\n.. code:: bash\n\n    pip install mri10yr06mo01da_normal\n\nand run with\n\n.. code:: bash\n\n    mri10yr06mo01da_normal.py --man /tmp\n\nto get inline help. The app should also understand being called with only one positional argument\n\n.. code:: bash\n\n    mri10yr06mo01da_normal.py /destination/directory\n\nUsing ``docker run``\n~~~~~~~~~~~~~~~~~~~~\n\nTo run using ``docker``, be sure to assign an \"input\" directory to ``/incoming`` and an output directory to ``/outgoing``. *Make sure that the* ``$(pwd)/out`` *directory is world writable!*\n\nNow, prefix all calls with \n\n.. code:: bash\n\n    docker run --rm -v $(pwd)/out:/outgoing                             \\\n            fnndsc/pl-mri10yr06mo01da_normal mri10yr06mo01da_normal.py                        \\\n\nThus, getting inline help is:\n\n.. code:: bash\n\n    mkdir out && chmod 777 out\n    docker run --rm -v $(pwd)/in:/incoming -v $(pwd)/out:/outgoing      \\\n            fnndsc/pl-mri10yr06mo01da_normal mri10yr06mo01da_normal.py  \\\n            --man                                                       \\\n            /outgoing\n\nExamples\n--------\n\nCopy the embedded MRI data to the ``out`` directory\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n.. code:: bash\n\n    mkdir out && chmod 777 out\n    docker run --rm -v $(pwd)/out:/outgoing                             \\\n            fnndsc/pl-mri10yr06mo01da_normal mri10yr06mo01da_normal.py  \\\n            /outgoing\n\nCopy a user specified directory to the ``out`` directory\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n.. code:: bash\n\n    mkdir out && chmod 777 out\n    docker run --rm -v $(pwd)/out:/outgoing                             \\\n            fnndsc/pl-mri10yr06mo01da_normal mri10yr06mo01da_normal.py  \\\n            --dir /usr/src/data\n            /outgoing",
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