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        "author": "Colin Palmer",
        "author_email": "colin.palmer@stfc.ac.uk",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 5 - Production/Stable",
            "Intended Audience :: Developers",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: BSD License",
            "Natural Language :: English",
            "Operating System :: OS Independent",
            "Programming Language :: Python",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3.4",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics",
            "Topic :: Software Development :: Libraries :: Python Modules"
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        "description": "mrcfile.py\n==========\n\n|build-status| |pypi-version| |python-versions| |readthedocs|\n\n.. |build-status| image:: https://travis-ci.org/ccpem/mrcfile.svg?branch=master\n    :target: https://travis-ci.org/ccpem/mrcfile\n    :alt: Build Status\n\n.. |pypi-version| image:: https://img.shields.io/pypi/v/mrcfile.svg\n    :target: https://pypi.python.org/pypi/mrcfile\n    :alt: Python Package Index\n\n.. |python-versions| image:: https://img.shields.io/pypi/pyversions/mrcfile.svg\n    :target: https://pypi.python.org/pypi/mrcfile\n    :alt: Python Versions\n\n.. |readthedocs| image:: https://readthedocs.org/projects/mrcfile/badge/\n    :target: http://mrcfile.readthedocs.org\n    :alt: Documentation\n\n.. start_of_main_text\n\n``mrcfile`` is a Python implementation of the `MRC2014 file format`_, which\nis used in structural biology to store image and volume data.\n\nIt allows MRC files to be created and opened easily using a very simple API,\nwhich exposes the file's header and data as `numpy`_ arrays. The code runs in\nPython 2 and 3 and is fully unit-tested.\n\n.. _MRC2014 file format: http://www.ccpem.ac.uk/mrc_format/mrc2014.php\n.. _numpy: http://www.numpy.org/\n\nThis library aims to allow users and developers to read and write\nstandard-compliant MRC files in Python as easily as possible, and with no\ndependencies on any compiled libraries except `numpy`_. You can use it\ninteractively to inspect files, correct headers and so on, or in scripts and\nlarger software packages to provide basic MRC file I/O functions.\n\nKey Features\n------------\n\n* Clean, simple API for access to MRC files\n* Easy to install and use\n* Validation of files according to the MRC2014 format\n* Seamless support for gzip and bzip2 files\n* Memory-mapped file option for fast random access to very large files\n* Asynchronous opening option for background loading of multiple files\n* Runs in Python 2 & 3, on Linux, Mac OS X and Windows\n\nInstallation\n------------\n\nThe ``mrcfile`` library is available from the Python package index::\n\n    pip install mrcfile\n\nIt is also included in the ``ccpem-python`` environment in the  `CCP-EM`_\nsoftware suite.\n\n.. _CCP-EM: http://www.ccpem.ac.uk\n\nThe source code (including the full test suite) can be found `on GitHub`_.\n\n.. _on GitHub: https://github.com/ccpem/mrcfile\n\nBasic usage\n-----------\n\nThe easiest way to open a file is with the `mrcfile.open`_ and `mrcfile.new`_\nfunctions. These return an `MrcFile`_ object which represents an MRC file on\ndisk.\n\n.. _mrcfile.open: http://mrcfile.readthedocs.io/en/latest/source/mrcfile.html#mrcfile.open\n.. _mrcfile.new: http://mrcfile.readthedocs.io/en/latest/source/mrcfile.html#mrcfile.new\n.. _MrcFile: http://mrcfile.readthedocs.io/en/latest/usage_guide.html#using-mrcfile-objects\n\nTo open an MRC file and read a slice of data::\n\n    >>> import mrcfile\n    >>> with mrcfile.open('tests/test_data/EMD-3197.map') as mrc:\n    ...     mrc.data[10,10]\n    ... \n    array([ 2.58179283,  3.1406002 ,  3.64495397,  3.63812137,  3.61837363,\n            4.0115056 ,  3.66981959,  2.07317996,  0.1251585 , -0.87975615,\n            0.12517013,  2.07319379,  3.66982722,  4.0115037 ,  3.61837196,\n            3.6381247 ,  3.64495087,  3.14059472,  2.58178973,  1.92690361], dtype=float32)\n\nTo create a new file with a 2D data array, and change some values::\n\n    >>> with mrcfile.new('tmp.mrc') as mrc:\n    ...     mrc.set_data(np.zeros((5, 5), dtype=np.int8))\n    ...     mrc.data[1:4,1:4] = 10\n    ...     mrc.data\n    ... \n    array([[ 0,  0,  0,  0,  0],\n           [ 0, 10, 10, 10,  0],\n           [ 0, 10, 10, 10,  0],\n           [ 0, 10, 10, 10,  0],\n           [ 0,  0,  0,  0,  0]], dtype=int8)\n\nThe data will be saved to disk when the file is closed, either automatically at\nthe end of the ``with`` block (like a normal Python file object) or manually by\ncalling ``close()``. You can also call ``flush()`` to write any changes to disk\nand keep the file open.\n\nTo validate an MRC file::\n\n    >>> mrcfile.validate('tests/test_data/EMD-3197.map')\n    File does not declare MRC format version 20140: nversion = 0\n    False\n\n    >>> mrcfile.validate('tmp.mrc')\n    True\n\nDocumentation\n-------------\n\nFull documentation is available on `Read the Docs`_.\n\n.. _Read the Docs: http://mrcfile.readthedocs.org\n\nCiting mrcfile\n--------------\n\nIf you find ``mrcfile`` useful in your work, please cite:\n\nBurnley T, Palmer C & Winn M (2017) Recent developments in the CCP-EM\nsoftware suite. *Acta Cryst.* D\\ **73**:469--477.\n`doi: 10.1107/S2059798317007859`_\n\n.. _`doi: 10.1107/S2059798317007859`: https://doi.org/10.1107/S2059798317007859\n\nContributing\n------------\n\nPlease use the `GitHub issue tracker`_ for bug reports and feature requests, or\n`email CCP-EM`_.\n\n.. _GitHub issue tracker: https://github.com/ccpem/mrcfile/issues\n.. _email CCP-EM: ccpem@stfc.ac.uk\n\nCode contributions are also welcome, please submit pull requests to the\n`GitHub repository`_.\n\n.. _GitHub repository: https://github.com/ccpem/mrcfile\n\nTo run the test suite, go to the top-level project directory (which contains\nthe ``mrcfile`` and ``tests`` packages) and run ``python -m unittest tests``.\n(Or, if you have `tox`_ installed, run ``tox``.)\n\n.. _tox: http://tox.readthedocs.org\n\nLicence\n-------\n\nThe project is released under the BSD licence.\n\n\n\n",
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