{ "info": { "author": "Seven Bridges Genomics", "author_email": "kaushik.ghose@sbgdinc.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 5 - Production/Stable", "Intended Audience :: Science/Research", "License :: OSI Approved :: Apache Software License", "Programming Language :: Python :: 3.4", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "Mitty is a data simulator meant to help debug aligners and variant\ncallers.\n\nIt requires Python 3.4 or later. It is released under the\nApache 2.0 license.\n\nFeatures\n========\n\n- Generate reads from the whole genome, a single tiny region or from a\n set of regions as desired\n- Handles X, Y chromosomes and polyploidy IF the VCF GT field is\n properly set\n- Read qname stores correct POS, CIGAR and the sizes of variants\n covered by the read\n- Name of sample included in read allowing us to mix FASTQs from\n different simulations/sources\n\n - Can mix viral contamination into reads\n - Can do tumor/normal mixes\n\n- Corruption module adds sequencing errors to reads\n\n - Read models can be sampled from existing BAM files\n\n- \"God aligner\" writes out a BAM with perfect alignments which can be\n used for BAM comparisons\n- Simple genome simulator to generate VCFs with SNPs and different\n sizes of Insertions and Deletions for aligner/caller testing\n- Analyze, plot and debug alignment accuracy with composable analysis functions\n\n\nTutorial and usage manual can be found here_.\n\n.. _here: https://github.com/sbg/Mitty\n\n", "description_content_type": "", "docs_url": null, "download_url": "https://github.com/sbg/Mitty/archive/development.zip", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/sbg/Mitty", "keywords": "simulator,genomics,ngs,read mapper,aligner,variant caller", "license": "", "maintainer": "", "maintainer_email": "", "name": "mitty", "package_url": "https://pypi.org/project/mitty/", "platform": "", "project_url": "https://pypi.org/project/mitty/", "project_urls": { "Download": "https://github.com/sbg/Mitty/archive/development.zip", "Homepage": "https://github.com/sbg/Mitty" }, "release_url": "https://pypi.org/project/mitty/2.29.0/", "requires_dist": [ "cython", "setuptools (>=24.3.0)", "numpy (>=1.11.0)", "click (>=3.3)", "pysam (==0.10.0)", "matplotlib (>=1.3.0)", "scipy", "pandas (>=0.20.3)", "bokeh (>=0.12.13)", "jupyter (>=1.0.0)", "cytoolz", "xarray (>=0.9.6)", "nose" ], "requires_python": ">=3.4", "summary": "Simulator for genomic data", "version": "2.29.0" }, "last_serial": 4463966, "releases": { "2.23.0.dev0": [ { "comment_text": "", "digests": { "md5": "ce3901056bea0a6782b4fe4578a736bc", "sha256": "efc91fe5c9c14b8281ff557f37a909d20046121157eec6a4ee457a7ac1339116" }, "downloads": -1, "filename": "mitty-2.23.0.dev0.tar.gz", "has_sig": false, "md5_digest": "ce3901056bea0a6782b4fe4578a736bc", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3.4", "size": 1235558, "upload_time": "2017-08-02T14:43:34", "url": "https://files.pythonhosted.org/packages/42/a9/d46130b438fb0c09795f2dd7866231123304016dcbca4d8f05af00213762/mitty-2.23.0.dev0.tar.gz" } ], "2.23.1": [ { "comment_text": "", "digests": { "md5": "ec93847cf55dcec77d636000699b2560", "sha256": "e5dbf7411e53fef866e615f41eb211adee91a9865e28c36c3cd69ca8ee1632d9" }, "downloads": -1, "filename": "mitty-2.23.1.tar.gz", "has_sig": false, "md5_digest": "ec93847cf55dcec77d636000699b2560", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3.4", "size": 1255962, "upload_time": "2017-08-04T14:04:34", "url": "https://files.pythonhosted.org/packages/a7/fc/2bdc6e839d47f735cee5af55b029567c3efc81e83d7dc92e990f005006e0/mitty-2.23.1.tar.gz" } ], "2.25.1": [ { "comment_text": "", "digests": { "md5": "818e6f1cab7fd96ed20f655819953321", "sha256": "0bf75cb911f0f50a6fe4a77d2e36623fcfa7e5c2809b502e400c5f2410a53576" }, "downloads": -1, "filename": "mitty-2.25.1-py3-none-any.whl", "has_sig": false, "md5_digest": "818e6f1cab7fd96ed20f655819953321", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": ">=3.4", "size": 1373323, "upload_time": "2017-09-25T10:36:06", "url": "https://files.pythonhosted.org/packages/62/59/bd8a083dca8be52305268bfbcca7b0aa3c3eb96c81471b0ac7a7679c0418/mitty-2.25.1-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "49466d6bb206e91bb7fad2984d2793b6", "sha256": "1902f184778c6327764b22527403998c689d9e47c29dcbc959d12f36efb8ff4f" }, "downloads": -1, "filename": "mitty-2.25.1.tar.gz", "has_sig": false, "md5_digest": "49466d6bb206e91bb7fad2984d2793b6", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3.4", "size": 1358088, "upload_time": "2017-09-25T10:37:07", "url": "https://files.pythonhosted.org/packages/6f/e5/bd44175e2fbc5cfe20a8dd638a62d9f1bd1d6d83376e6b0daa1c60ec1373/mitty-2.25.1.tar.gz" } ], "2.29.0": [ { "comment_text": "", "digests": { "md5": "3ae177ab3827a724878df8f82cd8edc0", "sha256": "088fd9700ed3abf68235155300476d0d877072916fb7ce3035340b685470033a" }, "downloads": -1, "filename": "mitty-2.29.0-py3-none-any.whl", "has_sig": false, "md5_digest": "3ae177ab3827a724878df8f82cd8edc0", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": ">=3.4", "size": 1301109, "upload_time": "2018-11-08T03:22:52", "url": "https://files.pythonhosted.org/packages/19/a5/7693b469779ef5f2950efeb6eabe33ccca3dec5b4e885ef9dcb221d7b519/mitty-2.29.0-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "f12a6a41d5738d7452c1aab114833406", "sha256": "c5a00be1c1ff326fb8f9ffd2664f9888aaa406c4021c80b2b99c64bd4a390f0b" }, "downloads": -1, "filename": "mitty-2.29.0.tar.gz", "has_sig": false, "md5_digest": "f12a6a41d5738d7452c1aab114833406", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3.4", "size": 1260610, "upload_time": "2018-11-08T03:22:54", "url": "https://files.pythonhosted.org/packages/16/bd/22f806b2c4db9a32e3e4ae617ed86df842be78b7d34e9d8c6ffe8f5c5db8/mitty-2.29.0.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "3ae177ab3827a724878df8f82cd8edc0", "sha256": "088fd9700ed3abf68235155300476d0d877072916fb7ce3035340b685470033a" }, "downloads": -1, "filename": "mitty-2.29.0-py3-none-any.whl", "has_sig": false, "md5_digest": "3ae177ab3827a724878df8f82cd8edc0", "packagetype": "bdist_wheel", "python_version": "py3", "requires_python": ">=3.4", "size": 1301109, "upload_time": "2018-11-08T03:22:52", "url": "https://files.pythonhosted.org/packages/19/a5/7693b469779ef5f2950efeb6eabe33ccca3dec5b4e885ef9dcb221d7b519/mitty-2.29.0-py3-none-any.whl" }, { "comment_text": "", "digests": { "md5": "f12a6a41d5738d7452c1aab114833406", "sha256": "c5a00be1c1ff326fb8f9ffd2664f9888aaa406c4021c80b2b99c64bd4a390f0b" }, "downloads": -1, "filename": "mitty-2.29.0.tar.gz", "has_sig": false, "md5_digest": "f12a6a41d5738d7452c1aab114833406", "packagetype": "sdist", "python_version": "source", "requires_python": ">=3.4", "size": 1260610, "upload_time": "2018-11-08T03:22:54", "url": "https://files.pythonhosted.org/packages/16/bd/22f806b2c4db9a32e3e4ae617ed86df842be78b7d34e9d8c6ffe8f5c5db8/mitty-2.29.0.tar.gz" } ] }