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        "author": "Anders Goncalves da Silva",
        "author_email": "andersgs@gmail.com",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "MigVerify: Test and clean up Migrate-N infile with many sequence loci.\n======================================================================\n\n.. image:: https://travis-ci.org/andersgs/migverify.svg?branch=master\n    :target: https://travis-ci.org/andersgs/migverify\n\nINTRODUCTION\n------------\n\nIn our experience, Migrate-N does not work well with monomorphic loci.\n``migverify`` will go through your ``infile``, and output an\n``infile_clean``.\n\nBy default, ``migverify`` will remove all loci that have fewer than two\nhaplotypes, and will remove loci with samples with more than 10% missing\ndata. These values can be changed.\n\nINSTALLATION\n------------\n\n``migverify`` is written in Python3 (requires version >=3.6). It can be\ninstalled with ``pip``:\n\n::\n\n    `pip3 install migverify`\n\nTo get the latest version:\n\n::\n\n    `pip3 install git+https://www.github.com/andersgs/migverify.git`\n\nUSAGE\n-----\n\nInstallation will make available a script called ``run_migverify``,\nwhich should be in your ``PATH``.\n\nYou can checkout the help with:\n\n::\n\n    `run_migverify --help`\n\nRunning with default settings\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n::\n\n    `run_migverify infile`\n\nFilter out loci with fewer than 3 haplotypes\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n::\n\n    `run_migverify -m 3 infile`\n\nFilter out loci with samples with more than 20% missing data\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n::\n\n    `run_migverify -p 0.2 infile`\n\nQUESTIONS or ISSUES\n-------------------\n\n`GitHub Issues <https://github.com/andersgs/migverify/issues>`__\n\n.. |Build Status| image:: https://travis-ci.org/andersgs/migverify.svg?branch=master\n   :target: https://travis-ci.org/andersgs/migverify\n",
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