{ "info": { "author": "Peter Wilton", "author_email": "peterrwilton@gmail.com", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Programming Language :: Python", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "`microplink`\n===========\n\nThis class provides a minimal and fast interface for retrieving genotypes\nfrom Plinks's BED/BIM/FAM file trios. The BED file must fit in memory.\n\nRequirements\n------------\n\n`numpy`, `pandas`, and `numba`. These are included with many Python\ndistributions.\n\nInstallation\n------------\n\nRun `pip install microplink` or clone this repository and run `python setup.py\ninstall` from the repository directory.\n\nUsage\n-----\n\nTypical usage:\n\n import microplink as mic\n\n # Equivalent to `pf = mic.PlinkFiles('test.bed', 'test.bim', 'test.fam')`\n pf = mic.PlinkFiles('test')\n\n # fetch by chromosome and position\n pf.get_genotypes(chromosome=1, position=10000)\n\n # fetch by variant name (often RSID)\n pf.get_genotypes(snp='rs1235123')\n\n # fetch by SNP integer index\n pf.get_genotypes(snp_index=0)\n\n\n", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/ammodramus/microplink", "keywords": "", "license": "", "maintainer": "", "maintainer_email": "", "name": "microplink", "package_url": "https://pypi.org/project/microplink/", "platform": "", "project_url": "https://pypi.org/project/microplink/", "project_urls": { "Homepage": "https://github.com/ammodramus/microplink" }, "release_url": "https://pypi.org/project/microplink/0.0.1/", "requires_dist": [ "pandas", "numpy", "numba" ], "requires_python": ">=2.7", "summary": "PLINK file processing with numba", "version": "0.0.1" }, "last_serial": 6001823, "releases": { "0.0.1": [ { "comment_text": "", "digests": { "md5": "d80250f3aa0bb1dbaeb127dcc43a96ec", "sha256": "94631abfa86cc3e5333e78f92be767e679fe82dece8664bfc2251b415393036f" }, "downloads": -1, "filename": "microplink-0.0.1-py2-none-any.whl", "has_sig": false, "md5_digest": "d80250f3aa0bb1dbaeb127dcc43a96ec", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": ">=2.7", "size": 4449, "upload_time": "2019-10-20T03:41:01", "url": "https://files.pythonhosted.org/packages/b6/67/f563f245c61cb53e15fbcd54d3615893f76d6d72df93b0e70502da2e6340/microplink-0.0.1-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "94b5127261b04b030b82e1e7d508f1e7", "sha256": "d8c857876a8a302c37404fc3648e57ae51f71c507607aad7e3a97cda8335c7a8" }, "downloads": -1, "filename": "microplink-0.0.1.tar.gz", "has_sig": false, "md5_digest": "94b5127261b04b030b82e1e7d508f1e7", "packagetype": "sdist", "python_version": "source", "requires_python": ">=2.7", "size": 3087, "upload_time": "2019-10-20T03:41:03", "url": "https://files.pythonhosted.org/packages/4c/74/76cc8c0cf3e3dc659be2808031ff4a0f8803f6c77fe830e5444669931cec/microplink-0.0.1.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "d80250f3aa0bb1dbaeb127dcc43a96ec", "sha256": "94631abfa86cc3e5333e78f92be767e679fe82dece8664bfc2251b415393036f" }, "downloads": -1, "filename": "microplink-0.0.1-py2-none-any.whl", "has_sig": false, "md5_digest": "d80250f3aa0bb1dbaeb127dcc43a96ec", "packagetype": "bdist_wheel", "python_version": "py2", "requires_python": ">=2.7", "size": 4449, "upload_time": "2019-10-20T03:41:01", "url": "https://files.pythonhosted.org/packages/b6/67/f563f245c61cb53e15fbcd54d3615893f76d6d72df93b0e70502da2e6340/microplink-0.0.1-py2-none-any.whl" }, { "comment_text": "", "digests": { "md5": "94b5127261b04b030b82e1e7d508f1e7", "sha256": "d8c857876a8a302c37404fc3648e57ae51f71c507607aad7e3a97cda8335c7a8" }, "downloads": -1, "filename": "microplink-0.0.1.tar.gz", "has_sig": false, "md5_digest": "94b5127261b04b030b82e1e7d508f1e7", "packagetype": "sdist", "python_version": "source", "requires_python": ">=2.7", "size": 3087, "upload_time": "2019-10-20T03:41:03", "url": "https://files.pythonhosted.org/packages/4c/74/76cc8c0cf3e3dc659be2808031ff4a0f8803f6c77fe830e5444669931cec/microplink-0.0.1.tar.gz" } ] }