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"description": "\n[](http://microdrop.readthedocs.io/en/dev/?badge=dev)\n[](https://gitter.im/wheeler-microfluidics/microdrop?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)\n\nMicroDrop is a graphical user interface for the [DropBot][1] digital\nmicrofluidics control system (described in detail in [Fobel et al., Appl. Phys.\nLett. 102, 193513 (2013)][2]).\n\nIf you use this information in work that you publish, please cite as\nappropriate.\n\n\n\n**Table of Contents** *generated with [DocToc](https://github.com/thlorenz/doctoc)*\n\n- [Installation](#installation)\n - [No existing Python 2.7 32-bit Windows installation **(recommended)**](#no-existing-python-27-32-bit-windows-installation-recommended)\n - [Existing `anaconda` (Python 2.7 32-bit Windows) installation **(recommended)**](#existing-anaconda-python-27-32-bit-windows-installation-recommended)\n - [Create a separate `conda` environment for MicroDrop](#create-a-separate-conda-environment-for-microdrop)\n - [Other Python 2.7 32-bit Windows installation (using `pip`)](#other-python-27-32-bit-windows-installation-using-pip)\n - [**Shortcuts**](#shortcuts)\n - [**Import** profile](#import-profile)\n- [Profile Manager **(new)**](#profile-manager-new)\n - [Import profile](#import-profile)\n - [Remove profile](#remove-profile)\n- [Install plugins](#install-plugins)\n - [Featured plugins](#featured-plugins)\n - [Install plugins through MicroDrop plugin manager (`mpm`)](#install-plugins-through-microdrop-plugin-manager-mpm)\n - [Install plugins through MicroDrop GUI](#install-plugins-through-microdrop-gui)\n- [Credits](#credits)\n\n\n\n# Installation #\n\nMicroDrop can be installed using any of the methods below.\n\n### No existing Python 2.7 32-bit Windows installation **(recommended)** ###\n\nDownload installer for latest [MicroDrop 1.0 release][4].\n\nThis installer is a customized distribution of the popular [`Miniconda`][5]\nPython.\n\n\n### Existing `anaconda` (Python 2.7 32-bit Windows) installation **(recommended)** ###\n\nRun:\n\n conda install -c wheeler-microfluidics \"microdrop>=1.0,<2.0\" microdrop-launcher\n\n**Note** *the `-c wheeler-microfluidics` flag allows installing conda packages\nfrom the `wheeler-microfluidics` channel*.\n\n\n### Create a separate `conda` environment for MicroDrop ###\n\nRun:\n\n conda create -n microdrop -c wheeler-microfluidics \"microdrop>=1.0,<2.0\" microdrop-launcher\n\nTo activate the MicroDrop `conda` environment, run:\n\n activate microdrop\n\nTo deactivate the MicroDrop `conda` environment, run:\n\n deactivate\n\nSee [\"Managing environments\"][15] section of Conda documentation for more\ninformation.\n\n\n### Other Python 2.7 32-bit Windows installation (using `pip`, **not recommended**) ###\n\n 1. Update `pip`:\n\n pip install -U pip\n\n 2. Install microdrop from [PyPi][3]:\n\n pip install --find-links http://192.99.4.95/wheels --trusted-host 192.99.4.95 \"microdrop>=1.0,<2.0\"\n\n**Note** *`192.99.4.95` is the IP address of the official MicroDrop update\nserver where MicroDrop dependencies not available on PyPI are stored as\nwheels*.\n\n![](\"microdrop/static/images/microdrop-shortcuts.png\")
\n\n## **Shortcuts** ##\n\nIf MicroDrop is installed using a Conda Python distribution (including the [official installer][1])\n\n - **Documentation**: Open [online MicroDrop documentation][readthedocs].\n - **GitHub project**: Open MicroDrop [GitHub project page][github].\n - **MicroDrop Profile Manager**: Launch MicroDrop profile manager.\n - **MicroDrop environment prompt**: Launch Windows command prompt with\n MicroDrop Conda environment activated.\n - **MicroDrop**: Launch MicroDrop if only one **profile** is available\n *(default)*. Otherwise, launch **MicroDrop Profile Manager** to select\n **profile** to launch.\n * **Tip**: Right-click on shortcut to **pin** to **taskbar** for easy\n access.\n\n## **Import** profile ##\n\nIf existing **profile** directory is not automatically found, it can be\nmanually **imported** by launching the **\"MicroDrop Profile Manager\"**\nshortcut.\n\nSee [Profile Manager](#profile-manager-new) section below.\n\n# Profile Manager **(new)** #\n\nIn environments where, for example, multiple users are using the same computer\nto perform MicroDrop experiments, it can be helpful to create separate\nMicroDrop **profiles**. Each MicroDrop **profile** contains **devices** and\n**plugins**, as well as **experiment logs**.\n\nThe **MicroDrop Profile Manager** provides an interface to manage one or more\nMicroDrop profiles. Initially, the **default profile path** (i.e.,\n`\\Microdrop`) is listed.\n\nAs shown below:\n\n - Profiles are **listed** according when they were last launched, with the\n **most recently used profile first**.\n - Existing profiles may be **imported**.\n - Listed profiles may be **removed** from the profile list (and optionally\n **deleted** entirely).\n - Listed profiles may be **opened** in the system file browser.\n - MicroDrop may be **launched** using any of the listed profiles.\n\n![MicroDrop Profile Manager][microdrop-profile-manager]\n\n\n## Import profile ##\n\nWhen an existing **profile** is imported, **plugin** dependencies are installed\nwhile the following dialog is displayed:\n\n![MicroDrop Profile Manager - install dependencies][install-dependencies]\n\n## Remove profile ##\n\nThe following **dialog** is displayed when the **Remove** button for a listed\nprofile is **clicked**:\n\n![MicroDrop Profile Manager - remove profile][remove-profile]\n\nClicking the **Remove** button in the dialog removes the corresponding\n**profile** from the list, but **does not** delete any files. The **profile**\ncan be imported to add it back to the profile list.\n\n**Warning:** Clicking the **Remove with data** button in the dialog removes the\ncorresponding **profile** from the list, **and deletes the profile directory**.\nThis **cannot be undone**.\n\n\n# Install plugins #\n\nPlugins can either be installed using the [MicroDrop plugin\nmanager](#install-plugins-through-microdrop-plugin-manager-mpm) command-line\ntool, or through the [MicroDrop user\ninterface](#install-plugins-through-microdrop-gui).\n\n### Featured plugin ###\n\n - [`dmf_control_board`][7]\n * Control actuation parameters for the [DropBot][12] open-source Digital\n Microfluidic (DMF) automation system.\n\n### Install plugins through MicroDrop plugin manager (`mpm`) ###\n\nThe Microdrop plugin manager is a command-line tool (inspired by `pip`) for\nmanaging (e.g., install, uninstall) Microdrop plugins.\n\nFor full usage details, see the [project home page][14].\n\nBasic usage to install a plugin:\n\n - Start MicroDrop environment command prompt using the following shortcut:\n\n ![][microdrop-environment-shortcut]\n\n - In MicroDrop environment command prompt, run:\n\n python -m mpm -c \\microdrop.ini install plugin [plugin [plugin ...]]\n\nTo install featured plugin:\n\n python -m mpm -c \\microdrop.ini install dmf_control_board\n\n### Install plugins through MicroDrop GUI ###\n\n 1. Install plugins:\n\n ![Install MicroDrop plugins][install-plugins]\n\n 2. Relaunch MicroDrop.\n\n\n[1]: http://microfluidics.utoronto.ca/microdrop\n[2]: http://dx.doi.org/10.1063/1.4807118\n[3]: https://pypi.python.org/pypi/microdrop\n[4]: https://github.com/wheeler-microfluidics/microdrop/releases/latest\n[5]: http://conda.pydata.org/miniconda.html\n[6]: https://github.com/wheeler-microfluidics/device-quality-control-plugin\n[7]: https://github.com/wheeler-microfluidics/dmf_control_board_plugin\n[8]: https://github.com/wheeler-microfluidics/dmf_device_ui_plugin\n[9]: https://github.com/wheeler-microfluidics/metadata_plugin\n[10]: https://github.com/wheeler-microfluidics/step_label_plugin\n[11]: https://github.com/wheeler-microfluidics/user_prompt_plugin\n[12]: http://microfluidics.utoronto.ca/dropbot/\n[13]: https://github.com/wheeler-microfluidics/droplet-planning-plugin\n[14]: https://github.com/wheeler-microfluidics/mpm\n[15]: http://conda.pydata.org/docs/using/envs.html\n\n[github]: https://github.com/wheeler-microfluidics/microdrop/tree/release-1.0\n[readthedocs]: http://microdrop.readthedocs.io/\n[install-plugins]: microdrop/static/images/plugins-install.gif\n[microdrop-environment-shortcut]: microdrop/static/images/microdrop-environment-shortcut.png\n[microdrop-profile-manager]: microdrop/static/images/microdrop-plugin-manager-annotated.png\n[install-dependencies]: microdrop/static/images/plugin-manager-install-dependencies.png\n[remove-profile]: microdrop/static/images/plugin-manager-remove.png\n\nCredits\n=======\n\nRyan Fobel \n\nChristian Fobel \n\n",
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