{ "info": { "author": "Phelim Bradley, Gil Goncalves", "author_email": "wave@phel.im, lursty@gmail.com", "bugtrack_url": null, "classifiers": [], "description": "# Metasort\n\nA Digital Health Hack Weekend Project using OneCodex API.\n\nFilter reads based on taxonomy assignment from OneCodex.\n\nUpload a Fast(a/q) file and download individual files sorted by species. \n\n## CLI\n\nset your OneCodex API key\n\nexport ONE_CODEX_API_KEY=f8xxxxxxxxxxx78\n\nsource venv/bin/activate\npip install metasort\n\nmetasort seq.fq /path/to/outdir\n\nexample output:\n\nwc -l /path/to/outdir/*.fq | sort -n -k1 | tail\n 19648 /path/to/outdir/Cellular organisms.fq\n 30016 /path/to/outdir/Staphylococcus aureus subsp. aureus.fq\n 81680 /path/to/outdir/Bacteria.fq\n 126364 /path/to/outdir/Staphylococcus epidermidis.fq\n 398684 /path/to/outdir/Staphylococcus.fq\n 2030880 /path/to/outdir/Firmicutes.fq\n 3195432 /path/to/outdir/Staphylococcus aureus.fq\n\n\n## Web\n\nUsage:\n\n pip install -r requirements\n 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