{ "info": { "author": "Sven Thiele", "author_email": "sthiele78@gmail.com", "bugtrack_url": null, "classifiers": [], "description": "# Installation\n\nYou can install meneco by running:\n\n > pip install --user meneco\n\nOn Linux the executable script can then be found in `~/.local/bin`\n\nand on MacOS the script is under `/Users/YOURUSERNAME/Library/Python/3.2/bin`.\n\n\n# Usage Command line interface\n\nTypical usage is:\n\n > meneco.py -d draftnetwork.sbml -s seeds.sbml -t targets.sbml -r repairnetwork.sbml\n\nFor more options you can ask for help as follows:\n\n > meneco.py --h\n usage: meneco.py [-h] -d DRAFTNET -s SEEDS -t TARGETS [-r REPAIRNET]\n [--enumerate]\n\n optional arguments:\n -h, --help show this help message and exit\n -d DRAFTNET, --draftnet DRAFTNET\n metabolic network in SBML format\n -s SEEDS, --seeds SEEDS\n seeds in SBML format\n -t TARGETS, --targets TARGETS\n targets in SBML format\n -r REPAIRNET, --repairnet REPAIRNET\n perform network completion using REPAIRNET a metabolic\n network in SBML format\n --enumerate enumerate all minimal completions\n\n\n# Usage Library\n\nFor a guided example, see a demonstration IPython [Notebook](http://nbviewer.jupyter.org/github/bioasp/meneco/blob/master/meneco.ipynb).\n\n\n# Samples\n\nSample files for the reconstruction of ectocarpus are available here: [ectocyc.sbml][1], [metacyc_16-5.sbml][2], [seeds.sbml][3], [targets.sbml][4]\n\n[1]: http://bioasp.github.io/downloads/samples/ectodata/ectocyc.sbml\n[2]: http://bioasp.github.io/downloads/samples/ectodata/metacyc_16-5.sbml\n[3]: http://bioasp.github.io/downloads/samples/ectodata/seeds.sbml\n[4]: http://bioasp.github.io/downloads/samples/ectodata/targets.sbml", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://bioasp.github.io/meneco/", "keywords": "", "license": "GPLv3+", "maintainer": "", "maintainer_email": "", "name": "meneco", "package_url": "https://pypi.org/project/meneco/", "platform": "", "project_url": "https://pypi.org/project/meneco/", "project_urls": { "Homepage": "http://bioasp.github.io/meneco/" }, "release_url": "https://pypi.org/project/meneco/1.5.3/", "requires_dist": null, "requires_python": "", "summary": "Metabolic Network Completion. 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