{
    "info": {
        "author": "Jonathan Ronen",
        "author_email": "yablee@gmail.com",
        "bugtrack_url": null,
        "classifiers": [],
        "description": "<div align=\"center\">\n\t<img src=\"hex-maui.png\" alt=\"maui\">\n</div>\n\n# maui\n\n[![Downloads](https://pepy.tech/badge/maui-tools)](https://pepy.tech/project/maui-tools)  [![codecov](https://codecov.io/gh/bimsbbioinfo/maui/branch/master/graph/badge.svg)](https://codecov.io/gh/bimsbbioinfo/maui) [![Codacy Badge](https://api.codacy.com/project/badge/Grade/36c1f3f252b543139fd930ba5f674535)](https://www.codacy.com/app/jonathanronen/maui?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=BIMSBbioinfo/maui&amp;utm_campaign=Badge_Grade) [![PyPI version](https://badge.fury.io/py/maui-tools.svg)](https://badge.fury.io/py/maui-tools) [![Documentation Status](https://readthedocs.org/projects/maui/badge/?version=latest)](https://maui.readthedocs.io/en/latest/?badge=latest) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/python/black)\n\n\n\n<!-- [![Build Status](https://travis-ci.com/BIMSBbioinfo/maui.svg?branch=master)](https://travis-ci.com/BIMSBbioinfo/maui) -->\n\n\nMulti-omics Autoencoder Integration (**maui**) is a python package for multi-omics data analysis. It is based on a bayesian latent factor model, with inference done using artificial neural networks. For details, check out our pre-print on bioRxiv: https://www.biorxiv.org/content/early/2018/11/12/464743\n\n## Installation\n\nmaui works with Python 3.6 and TensorFlow 1.1 (does not yet support the yet unreleased TensorFlow 2.0). The easiest way to install is from pypi:\n\n\tpip install -U maui-tools\n\nThis will install all necessary dependencies including keras an tensorflow. The default tensorflow (cpu) will be installed. If tensorflow GPU is needed, please install it prior to installation of maui.\n\nThe development version may be installed by cloning this repo and running `python setup.py install`, or, using `pip` directly from github:\n\n\tpip install -e git+https://github.com/BIMSBbioinfo/maui.git#egg=maui\n\n\n#### Optional dependencies\n\nSurvival analysis functionality supplied by lifelines [1]. It may be installed directly from pip using `pip install lifelines`.\n\n## Usage\n\nSee [the vignette](vignette/maui_vignette.ipynb), and check out [the documentation](https://maui.readthedocs.io/en/latest/).\n\n\n## Citation\n\n>  Evaluation of colorectal cancer subtypes and cell lines using deep learning. Jonathan Ronen, Sikander Hayat, Altuna Akalin. bioRxiv 464743; doi: https://doi.org/10.1101/464743\n\n## Contributing\n\nOpen an issue, send us a pull request, or shoot us an e-mail.\n\n## License\n\nmaui is released under the [GNU General Public License v3.0](LICENSE) or later.\n\n---------------------\n@jonathanronen, BIMSBbioinfo, 2018\n\n\n[1]: https://github.com/CamDavidsonPilon/lifelines\n\n\n",
        "description_content_type": "text/markdown",
        "docs_url": null,
        "download_url": "",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "https://github.com/BIMSBbioinfo/maui",
        "keywords": "",
        "license": "GPLv3",
        "maintainer": "",
        "maintainer_email": "",
        "name": "maui-tools",
        "package_url": "https://pypi.org/project/maui-tools/",
        "platform": "",
        "project_url": "https://pypi.org/project/maui-tools/",
        "project_urls": {
            "Homepage": "https://github.com/BIMSBbioinfo/maui"
        },
        "release_url": "https://pypi.org/project/maui-tools/0.1.7/",
        "requires_dist": [
            "pytest",
            "numpy (>=1.14.5)",
            "pandas",
            "scipy (==1.2.1)",
            "scikit-learn",
            "keras",
            "tensorflow (<2.0)",
            "pytest (>=3.6.0)"
        ],
        "requires_python": "",
        "summary": "Multi-omics Autoencoder Integration",
        "version": "0.1.7"
    },
    "last_serial": 5945360,
    "releases": {
        "0.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "1782ba9bc5cf6cc33f32c40fa64f4c38",
                    "sha256": "24fa652611aa8ace96ca5d21c81d0dbe561efc3e6c3366c82d383a458f922d27"
                },
                "downloads": -1,
                "filename": "maui_tools-0.1-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "1782ba9bc5cf6cc33f32c40fa64f4c38",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 22790,
                "upload_time": "2018-11-22T15:01:20",
                "url": "https://files.pythonhosted.org/packages/a1/cd/5cbbfd25c0ff1ca1388e88c2a93127f2662f1f22d9941a47d8b631c0c65b/maui_tools-0.1-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "630f69661e0203af296cf5456979d697",
                    "sha256": "274f10e99a48a8ee29f5e3580c14467faee4e706aeefca987d1e67950b095115"
                },
                "downloads": -1,
                "filename": "maui-tools-0.1.tar.gz",
                "has_sig": false,
                "md5_digest": "630f69661e0203af296cf5456979d697",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 10489,
                "upload_time": "2018-11-22T15:01:22",
                "url": "https://files.pythonhosted.org/packages/dd/89/732c28af693cd09bc771a65a1509d8daa54bf8f5cfdbb4458e8c57aba404/maui-tools-0.1.tar.gz"
            }
        ],
        "0.1.1": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "ec7af22fc7d0d25caf0df32074220152",
                    "sha256": "9a2549b8ff58605c3c1448c703d109afb49c6ed2f23adc2643b3829776daaebb"
                },
                "downloads": -1,
                "filename": "maui_tools-0.1.1-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "ec7af22fc7d0d25caf0df32074220152",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 23946,
                "upload_time": "2018-12-11T12:52:12",
                "url": "https://files.pythonhosted.org/packages/61/a4/9bb57c75530d048944ad2ff70d3429bff79f362a348eee7137005fd35728/maui_tools-0.1.1-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "84ef08fed7c87de7d685e5e3acd64bd4",
                    "sha256": "881e64869fb2929d7cdaf7e70ff6975ec03a592a8023ec0d1cce8628f0f6d183"
                },
                "downloads": -1,
                "filename": "maui-tools-0.1.1.tar.gz",
                "has_sig": false,
                "md5_digest": "84ef08fed7c87de7d685e5e3acd64bd4",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 12740,
                "upload_time": "2018-12-11T12:52:15",
                "url": "https://files.pythonhosted.org/packages/e7/9a/fd4c143ba8d11bd65c80875a25e733359f62f48861f3e13cf4408eeb0ebf/maui-tools-0.1.1.tar.gz"
            }
        ],
        "0.1.2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "c34b833e51f42c366577ab77492d485f",
                    "sha256": "2ff9071ef191f246d320116f4e0c4c3499b5bd3a55205cf9c05f3a3eb195e2d6"
                },
                "downloads": -1,
                "filename": "maui_tools-0.1.2-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "c34b833e51f42c366577ab77492d485f",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 24256,
                "upload_time": "2019-01-31T12:50:48",
                "url": "https://files.pythonhosted.org/packages/fb/83/b354a5f8cf0dfbdc7b64990ec8c2b9d12800da2dff601ab586f17e41a331/maui_tools-0.1.2-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "57053d4cb22c359a57a0933d6f48e324",
                    "sha256": "413c5133278d7377085b465c173e3279a20c681ecf92a316795b4df998cb7d69"
                },
                "downloads": -1,
                "filename": "maui-tools-0.1.2.tar.gz",
                "has_sig": false,
                "md5_digest": "57053d4cb22c359a57a0933d6f48e324",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 13150,
                "upload_time": "2019-01-31T12:50:51",
                "url": "https://files.pythonhosted.org/packages/77/b3/6eaffd67e4b923470d64692122c6bac31ab1be9019306338cdbb9c5ba618/maui-tools-0.1.2.tar.gz"
            }
        ],
        "0.1.3": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "8eeb5032ce4050b63cbef5a5f927842a",
                    "sha256": "ea2b1208f313ef94e26fbe8bad1d0c881970173eedab3579e680e8b6557634e8"
                },
                "downloads": -1,
                "filename": "maui_tools-0.1.3-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "8eeb5032ce4050b63cbef5a5f927842a",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 25172,
                "upload_time": "2019-04-10T14:47:08",
                "url": "https://files.pythonhosted.org/packages/6d/eb/ccfc30e08268802b53b9ddab68ba0fd3370addd05e4c4f409c0ef473e8a8/maui_tools-0.1.3-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "9fa6f270ab747456c38d58def3dc8954",
                    "sha256": "b658ba3d56faf37ace9c8630b81d512c6d79c218f053b63f00db5887bd07dde4"
                },
                "downloads": -1,
                "filename": "maui-tools-0.1.3.tar.gz",
                "has_sig": false,
                "md5_digest": "9fa6f270ab747456c38d58def3dc8954",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 14122,
                "upload_time": "2019-04-10T14:47:12",
                "url": "https://files.pythonhosted.org/packages/58/9f/6a449a013aab67e114e031c8ec8d8eb5f20ad542126f6b781be930f48b1d/maui-tools-0.1.3.tar.gz"
            }
        ],
        "0.1.4": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "5173c91c3f49ffe6a61523c0bcb592c2",
                    "sha256": "e7ff3357bb459fe6778219a5223e04e7e024b00400fcdb41073179e3c0b1dcf4"
                },
                "downloads": -1,
                "filename": "maui_tools-0.1.4-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "5173c91c3f49ffe6a61523c0bcb592c2",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 27803,
                "upload_time": "2019-05-10T14:48:00",
                "url": "https://files.pythonhosted.org/packages/93/92/9be68d9e117b72bb91a0644b8b49f4b0e7a7778652f2306ef54cd33dffd1/maui_tools-0.1.4-py3-none-any.whl"
            }
        ],
        "0.1.5": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "add5fd05fa00fb5772afbb7a4521d14c",
                    "sha256": "2bdded8aedc20ab5a71b3e62a8bf1ce80b0d1b4ee36d04bfc0c7089b6fc73bfb"
                },
                "downloads": -1,
                "filename": "maui_tools-0.1.5-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "add5fd05fa00fb5772afbb7a4521d14c",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 28657,
                "upload_time": "2019-06-25T17:09:10",
                "url": "https://files.pythonhosted.org/packages/7d/af/f0b9433a293a6e548944fdb5936be2c899ffec7df74fd99519051139e842/maui_tools-0.1.5-py3-none-any.whl"
            }
        ],
        "0.1.6": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "6d541379041930c310d6124b6ae396f4",
                    "sha256": "460c1a6ce709aee2ac86d3466b8c0c1273e40f2b50ef3853da8cd787ed1ea618"
                },
                "downloads": -1,
                "filename": "maui_tools-0.1.6-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "6d541379041930c310d6124b6ae396f4",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 28912,
                "upload_time": "2019-09-04T13:53:39",
                "url": "https://files.pythonhosted.org/packages/f7/80/73d4ed27843323c48299c3c7377f7085fc95c86e1114e0087b9ee9f2c1c5/maui_tools-0.1.6-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "239aff50f7fc210ce7b1998fe173759a",
                    "sha256": "2c95275cc3b9b576ec9c7a7697f3b213a765f2c08822f33d0e130616e39f0cf1"
                },
                "downloads": -1,
                "filename": "maui-tools-0.1.6.tar.gz",
                "has_sig": false,
                "md5_digest": "239aff50f7fc210ce7b1998fe173759a",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 18725,
                "upload_time": "2019-09-04T13:54:07",
                "url": "https://files.pythonhosted.org/packages/cc/8c/413dedcf3438d0897c4e9cdda445f23e033fd4aed34cddeeaa9971a53c7b/maui-tools-0.1.6.tar.gz"
            }
        ],
        "0.1.7": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "83e0baf862d80aac6ca5b9835c16a499",
                    "sha256": "0941f7210d555226cd7d0898b9ec1077985e49b4085b5e7548f151994c1b09be"
                },
                "downloads": -1,
                "filename": "maui_tools-0.1.7-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "83e0baf862d80aac6ca5b9835c16a499",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 28989,
                "upload_time": "2019-10-08T15:19:13",
                "url": "https://files.pythonhosted.org/packages/80/5b/a62fb8a1c1c8f2076b1058fe757187b30d11890e1a09f062951acf45d8d0/maui_tools-0.1.7-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "b1e45ba66f46e132a6161e4a045fbdb3",
                    "sha256": "639ece24f466d29aaad063b967c5ccc7d2e669d054dc21507c5cbd29035e6fa2"
                },
                "downloads": -1,
                "filename": "maui-tools-0.1.7.tar.gz",
                "has_sig": false,
                "md5_digest": "b1e45ba66f46e132a6161e4a045fbdb3",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 18814,
                "upload_time": "2019-10-08T15:20:27",
                "url": "https://files.pythonhosted.org/packages/aa/61/d58a6d737a532a72c50bebb5eec03b087f3d1365b9d2a03b18e784df4f47/maui-tools-0.1.7.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "83e0baf862d80aac6ca5b9835c16a499",
                "sha256": "0941f7210d555226cd7d0898b9ec1077985e49b4085b5e7548f151994c1b09be"
            },
            "downloads": -1,
            "filename": "maui_tools-0.1.7-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "83e0baf862d80aac6ca5b9835c16a499",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": null,
            "size": 28989,
            "upload_time": "2019-10-08T15:19:13",
            "url": "https://files.pythonhosted.org/packages/80/5b/a62fb8a1c1c8f2076b1058fe757187b30d11890e1a09f062951acf45d8d0/maui_tools-0.1.7-py3-none-any.whl"
        },
        {
            "comment_text": "",
            "digests": {
                "md5": "b1e45ba66f46e132a6161e4a045fbdb3",
                "sha256": "639ece24f466d29aaad063b967c5ccc7d2e669d054dc21507c5cbd29035e6fa2"
            },
            "downloads": -1,
            "filename": "maui-tools-0.1.7.tar.gz",
            "has_sig": false,
            "md5_digest": "b1e45ba66f46e132a6161e4a045fbdb3",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 18814,
            "upload_time": "2019-10-08T15:20:27",
            "url": "https://files.pythonhosted.org/packages/aa/61/d58a6d737a532a72c50bebb5eec03b087f3d1365b9d2a03b18e784df4f47/maui-tools-0.1.7.tar.gz"
        }
    ]
}