{ "info": { "author": "Andy Hauser", "author_email": "Andreas.Hauser@LMU.de", "bugtrack_url": null, "classifiers": [ "License :: OSI Approved :: MIT License", "Operating System :: OS Independent", "Programming Language :: Python :: 3" ], "description": "# longread_plots\nA collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.\n# Dependencies\n```bash\npip install --user --upgrade pandas seaborn\n```\n\nNote that matplot lib >= 3.0.0 is needed.\nPython >= 3.5 is therfore recommended, otherwise plots might be corrupted.\n\n# Installation\n\nFrom PyPi:\n```bash\npip3 install --user lrplots\n```\n\nFrom the release tar.gz:\n```bash\npython3 setup.py install --user\n```\n\n\n# Usage\nWith the pip3 installation it should be in your PATH and you should be able to just call:\n```bash\nlrplot example.fastq\n```\n\nIf the command can't be found, pip3 installed it in a path that is not in your PATH variable.\nYou can then find it with:\n```bash\nfind ~ -name lrplot\n```\nor\n```bash\nfind /usr/local -name lrplot\n```\nThen either add the containing directory to your PATH or just use the full path.\n\nYou can also call it like a script with python3 (or whatever your python3 is called):\n```bash\npython3 bin/lrplots example.fastq\n```\n\n# Output\n\n

\n\n\n \n

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