{
    "info": {
        "author": "Leighton Pritchard",
        "author_email": "leighton.pritchard@hutton.ac.uk",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 4 - Beta",
            "Environment :: Console",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Natural Language :: English",
            "Operating System :: MacOS :: MacOS X",
            "Operating System :: POSIX :: Linux",
            "Programming Language :: Python",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.5",
            "Programming Language :: Python :: 3.6",
            "Programming Language :: Python :: 3.7",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "# `lpbio`\n\nScripts, tools and modules for computational biology\n\n<!-- TOC -->\n\n- [Scripts](#scripts)\n- [Modules](#modules)\n- [Development notes](#development-notes)\n    - [Tests](#tests)\n\n<!-- /TOC -->\n\n## Scripts\n\nWhen installed, the `lpbio` package provides the following scripts, available at the command-line:\n\n- `bulk_prokka`: for application of `prokka` [https://github.com/tseemann/prokka](https://github.com/tseemann/prokka) to a directory of input bacterial genome assemblies, taking advantage of local schedulers.\n\n## Modules\n\nThe `lpbio` package provides the following modules for use in Python applications and scripts\n\n- `pysge`: a module that writes job files compatible with SGE-like schedulers, and runs them.\n- `swarm`: a module for interacting with the [`Swarm`](https://github.com/torognes/swarm) clustering tool and its output.\n\n## Development notes\n\nCreate a local environment, e.g. in `conda`, and install with `pip install -e .`:\n\n```bash\n$ conda create --name lpbio\n$ source activate lpbio\n$ pip install -e .\n```\n\n### Tests\n\nTests are intended to be run with `pytest` from the repository root (using `coverage` and `pytest-cov`):\n\n```bash\n$ pwd\nlpbio/\n$ pytest --cov\n```\n\n",
        "description_content_type": "text/markdown",
        "docs_url": null,
        "download_url": "https://github.com/widdowquinn/lpbio/releases",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "http://widdowquinn.github.io/lpbio/",
        "keywords": "genome bioinformatics sequence",
        "license": "MIT",
        "maintainer": "",
        "maintainer_email": "",
        "name": "lpbio",
        "package_url": "https://pypi.org/project/lpbio/",
        "platform": "Posix; MacOS X",
        "project_url": "https://pypi.org/project/lpbio/",
        "project_urls": {
            "Download": "https://github.com/widdowquinn/lpbio/releases",
            "Homepage": "http://widdowquinn.github.io/lpbio/"
        },
        "release_url": "https://pypi.org/project/lpbio/0.1.0a0/",
        "requires_dist": null,
        "requires_python": "",
        "summary": "lpbio provides scripts and modules for computational biology",
        "version": "0.1.0a0"
    },
    "last_serial": 4301604,
    "releases": {
        "0.1.0a0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "dc139e877bb1b70ca38f2ae96c08b0e7",
                    "sha256": "1959537e64cd4f60108cd6d62e98f4124ae001c05c563ca44686b6ce1a98717c"
                },
                "downloads": -1,
                "filename": "lpbio-0.1.0a0-py3-none-any.whl",
                "has_sig": false,
                "md5_digest": "dc139e877bb1b70ca38f2ae96c08b0e7",
                "packagetype": "bdist_wheel",
                "python_version": "py3",
                "requires_python": null,
                "size": 18913,
                "upload_time": "2018-09-23T11:41:06",
                "url": "https://files.pythonhosted.org/packages/49/31/08b7db78b146c812c8cb24bc77d6699636651c2c5ad9bf4eeea07ef7e6a2/lpbio-0.1.0a0-py3-none-any.whl"
            },
            {
                "comment_text": "",
                "digests": {
                    "md5": "845c9c647b62ae2091a3e2eb8e060007",
                    "sha256": "9d8b7f4fa39a661f7b14374003b70a81082ecf9f891ab36873ee617c0706fe67"
                },
                "downloads": -1,
                "filename": "lpbio-0.1.0a0.tar.gz",
                "has_sig": false,
                "md5_digest": "845c9c647b62ae2091a3e2eb8e060007",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 12803,
                "upload_time": "2018-09-23T11:41:08",
                "url": "https://files.pythonhosted.org/packages/b4/a0/dcddee6bd16c6f846858cef6843a32f8632a13827bdee0e7ccd8e5417837/lpbio-0.1.0a0.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "dc139e877bb1b70ca38f2ae96c08b0e7",
                "sha256": "1959537e64cd4f60108cd6d62e98f4124ae001c05c563ca44686b6ce1a98717c"
            },
            "downloads": -1,
            "filename": "lpbio-0.1.0a0-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "dc139e877bb1b70ca38f2ae96c08b0e7",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": null,
            "size": 18913,
            "upload_time": "2018-09-23T11:41:06",
            "url": "https://files.pythonhosted.org/packages/49/31/08b7db78b146c812c8cb24bc77d6699636651c2c5ad9bf4eeea07ef7e6a2/lpbio-0.1.0a0-py3-none-any.whl"
        },
        {
            "comment_text": "",
            "digests": {
                "md5": "845c9c647b62ae2091a3e2eb8e060007",
                "sha256": "9d8b7f4fa39a661f7b14374003b70a81082ecf9f891ab36873ee617c0706fe67"
            },
            "downloads": -1,
            "filename": "lpbio-0.1.0a0.tar.gz",
            "has_sig": false,
            "md5_digest": "845c9c647b62ae2091a3e2eb8e060007",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 12803,
            "upload_time": "2018-09-23T11:41:08",
            "url": "https://files.pythonhosted.org/packages/b4/a0/dcddee6bd16c6f846858cef6843a32f8632a13827bdee0e7ccd8e5417837/lpbio-0.1.0a0.tar.gz"
        }
    ]
}