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        "description": "# limix\n\n[![Travis](https://img.shields.io/travis/com/limix/limix.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/limix) [![AppVeyor](https://img.shields.io/appveyor/ci/Horta/limix.svg?style=flat-square&label=windows%20build)](https://ci.appveyor.com/project/Horta/limix) [![Documentation](https://readthedocs.org/projects/limix/badge/?version=latest&style=flat-square)](https://limix.readthedocs.io/) [![Forum](https://img.shields.io/badge/join%20the-community%20%F0%9F%92%AC-59b3d0.svg?style=flat-square)](https://forum.limix.io/)\n\nGenomic analyses require flexible models that can be adapted to the needs of the user.\n\nLimix is a flexible and efficient linear mixed model library with interfaces to Python.\nIt includes methods for\n\n- Single-variant association and interaction testing\n- Variance decompostion analysis with linear mixed models\n- Association and interaction set tests\n- Different utils for statistical analysis, basic i/o, and plotting.\n\nWe have an extensive [documentation](https://limix.readthedocs.io) of the library.\nIf you need further help or want to discuss anything related to limix, please, join our [forum](https://forum.limix.io/) \ud83d\udcac and have a chat with us \ud83d\ude03.\nIn case you have found a bug, please, report it creating an [issue](https://github.com/limix/limix/issues/new).\n\n## Install\n\n> **NOTE**: We will be maintaining limix 2.0.x for a while, in case you find some\n> missing feature in limix 3.0.x. If that is the case, please, type `pip install \"limix <3,>=2\"` in your terminal.\n\nInstallation is easy and works on macOS, Linux, and Windows:\n\n```bash\npip install limix\n```\n\nIf you already have Limix but want to upgrade it to the latest version:\n\n```bash\npip install limix --upgrade\n```\n\n## Interactive tutorials\n\n- [eQTL](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=eQTL.ipynb) (requires limix 2.0.x)\n- [Struct-LMM](https://mybinder.org/v2/gh/limix/limix-tutorials/master?filepath=struct-lmm.ipynb) (requires limix 2.0.x)\n\n## Running tests\n\nAfter installation, you can test it\n\n```bash\npython -c \"import limix; limix.test()\"\n```\n\nas long as you have [pytest](https://docs.pytest.org/en/latest/).\n\n## Authors\n\n* [Christoph Lippert](https://github.com/clippert)\n* [Danilo Horta](https://github.com/horta)\n* [Francesco Paolo Casale](https://github.com/fpcasale)\n* [Oliver Stegle](https://github.com/ostegle)\n\n## License\n\nThis project is licensed under the [Apache License License](https://raw.githubusercontent.com/limix/limix/2.0.0/LICENSE.md).",
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