{ "info": { "author": "Jeremy McRae", "author_email": "jmcrae@illumina.com", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "### python liftover utility\n\nConverts point coordinates between genome assemblies.\nInspired by [pyliftover](https://github.com/konstantint/pyliftover), the primary\nadvantage this offers is dictionary style conversion, as in access converted\ncoordinates via `converter[chrom][pos]`.\n\n\n### Installation\nInstall via pip: `pip install liftover`\n\n### Usage\n\n```python\nfrom liftover import get_lifter\n\nconverter = get_lifter('hg19', 'hg38')\nchrom = '1'\npos = 103786442\nconverter[chrom][pos]\n\nconverter.query(chrom, pos)\n\n# alternatively create a converter directly from a chainfile\nfrom liftover import ChainFile\nconverter = ChainFile('/home/user/hg18ToHg38.over.chain.gz', 'hg18', 'hg38')\nconverter[chrom][pos]\n```", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/jeremy_mcrae/liftover", "keywords": "", "license": "", "maintainer": "", "maintainer_email": "", "name": "liftover", "package_url": "https://pypi.org/project/liftover/", "platform": "", "project_url": "https://pypi.org/project/liftover/", "project_urls": { "Homepage": "https://github.com/jeremy_mcrae/liftover" }, "release_url": "https://pypi.org/project/liftover/1.0.2/", "requires_dist": null, "requires_python": "", "summary": "Package for converting between genome build coordinates", "version": "1.0.2" }, "last_serial": 5173749, "releases": { "1.0.0": [ { "comment_text": "", "digests": { "md5": "a2aac726313f960dec64b34faf47d281", "sha256": "b4316781028f56a266396f5369c2e2b7942eeee81331fca8bbcbcda13c660122" }, "downloads": -1, "filename": "liftover-1.0.0.tar.gz", "has_sig": false, "md5_digest": "a2aac726313f960dec64b34faf47d281", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3508, "upload_time": "2019-02-15T18:51:30", "url": "https://files.pythonhosted.org/packages/06/2f/ac428620f6c14dbafcfd49e498dc63c0f4a169dd81c8b3bd0fbf9d3dce77/liftover-1.0.0.tar.gz" } ], "1.0.1": [ { "comment_text": "", "digests": { "md5": "f70e4a5eea33928b7c1b714d6d49f049", "sha256": "3ec635b08873014c83873075d82c5594f82a6493d206c46787a9795599468c5e" }, "downloads": -1, "filename": "liftover-1.0.1.tar.gz", "has_sig": false, "md5_digest": "f70e4a5eea33928b7c1b714d6d49f049", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3692, "upload_time": "2019-02-15T18:55:21", "url": "https://files.pythonhosted.org/packages/25/07/85a6db39d3a82f6cd6ee906b86e32eb2dae4f429aad09cad8f190725fae5/liftover-1.0.1.tar.gz" } ], "1.0.2": [ { "comment_text": "", "digests": { "md5": "84307c8299a15030805bf672ea18019a", "sha256": "1ed80a997e3a12c6a38c4b9ca311fc3c3a828a4f4c6fa99e90a578022e039021" }, "downloads": -1, "filename": "liftover-1.0.2.tar.gz", "has_sig": false, "md5_digest": "84307c8299a15030805bf672ea18019a", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3695, "upload_time": "2019-04-22T17:32:17", "url": "https://files.pythonhosted.org/packages/7d/52/a4c9c91ec7b6fac0d0b35a6ccb81d7a16e01a255a74ed9b486e97eac9ac3/liftover-1.0.2.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "84307c8299a15030805bf672ea18019a", "sha256": "1ed80a997e3a12c6a38c4b9ca311fc3c3a828a4f4c6fa99e90a578022e039021" }, "downloads": -1, "filename": "liftover-1.0.2.tar.gz", "has_sig": false, "md5_digest": "84307c8299a15030805bf672ea18019a", "packagetype": "sdist", "python_version": "source", "requires_python": null, "size": 3695, "upload_time": "2019-04-22T17:32:17", "url": "https://files.pythonhosted.org/packages/7d/52/a4c9c91ec7b6fac0d0b35a6ccb81d7a16e01a255a74ed9b486e97eac9ac3/liftover-1.0.2.tar.gz" } ] }