{ "info": { "author": "Kortemme Lab, UCSF", "author_email": "support@kortemmelab.ucsf.edu", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Intended Audience :: Science/Research", "Programming Language :: Python :: 2", "Topic :: Scientific/Engineering :: Bio-Informatics" ], "description": "klab - The Kortemme Lab Tools Repository\n========================\nA collection of utilities used by our lab for computational biophysics, including PDB parsing, SGE cluster submission scripts, and interfaces with the Rosetta macromolecular software suite.\n\nCoding convention\n=================\n\nBesides the whitespace convention (spaces, not tabs), contributors can / generally do use their own preferences. However, code within a module should follow a consistent convention. Finally, please do not reformat modules created by other developers to your preferences.\n\nHere are some semi-standard guidelines: \n\n- General rules : The PEP 8 conventions (https://www.python.org/dev/peps/pep-0008/) are mostly sensible.\n- Blank lines : See \"Blank Lines\" in PEP 8. Particularly, surround top-level function and class definitions with two blank lines.\n- Line length : Up to the module creator programmer.\n- Whitespace : Use spaces instead of tabs, with indents set to 4 spaces. Feel free to nuke any tabbed indents with prejudice.\n- Import order : Import standard Python packages first (sys, os) then higher-level/add-on packages (sqlalchemy, numpy), then our other packages (klab), then this package (kddg). 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