{ "info": { "author": "Jinzhe Zeng", "author_email": "jzzeng@stu.ecnu.edu.cn", "bugtrack_url": null, "classifiers": [ "Natural Language :: English", "Operating System :: Microsoft :: Windows", "Operating System :: POSIX :: Linux", "Programming Language :: Python :: 3.6", "Topic :: Scientific/Engineering :: Chemistry", "Topic :: Software Development :: Libraries :: Python Modules", "Topic :: Software Development :: Version Control :: Git" ], "description": "# kconMD (k-Bags Convolutional Neural Network Molecular Dynamics)\n\n[![python version](https://img.shields.io/pypi/pyversions/kconmd.svg?logo=python&logoColor=white)](https://pypi.org/project/kconmd)\n[![PyPI](https://img.shields.io/pypi/v/kconmd.svg)](https://pypi.org/project/kconmd)\n[![Build Status](https://travis-ci.com/njzjz/kconmd.svg?branch=master)](https://travis-ci.com/njzjz/kconmd)\n[![Coverage Status](https://coveralls.io/repos/github/njzjz/kconmd/badge.svg?branch=master)](https://coveralls.io/github/njzjz/kconmd?branch=master)\n[![codecov](https://codecov.io/gh/njzjz/kconmd/branch/master/graph/badge.svg)](https://codecov.io/gh/njzjz/kconmd)\n\nMolecular Dynamics (MD) simulations supported by [k-Bags Convolutional Neural Network (kCON)](https://github.com/njzjz/kcon).\n\n**Author**: Jinzhe Zeng\n\nEmail: jzzeng@stu.ecnu.edu.cn\n\n[![Research Group](https://img.shields.io/website-up-down-green-red/http/computchem.cn.svg?label=Research%20Group)](http://computechem.cn)\n\n## Acknowledgement\n\nMany thanks to [Xin Chen](https://github.com/Bismarrck) for his help and development of [kCON](https://github.com/Bismarrck/kcon).\n\n## Requirements\n\n* [numpy](https://github.com/numpy/numpy)\n* [scipy](https://github.com/scipy/scipy)\n* [matplotlib](https://github.com/matplotlib/matplotlib)\n* [scikit-learn](https://github.com/scikit-learn/scikit-learn)\n* [ASE](https://wiki.fysik.dtu.dk/ase/)\n* [TensorFlow](https://github.com/tensorflow/tensorflow)\n\n## Installation\n\n### With pip\n\n```sh\npip install kconmd\n```\n\n### Build from source\n\n```sh\n$ git clone https://github.com/njzjz/kconmd\n$ cd kconmd/\n$ pip install .\n```\n\n## Examples\n\n### Simple example\n\nSee [examples/example.py](examples/example.py).\n\n### Client\u2013server model\n\nSee [examples/server.py](examples/server.py) and [examples/client.py](examples/client.py).\n\n### Run MD with LAMMPS\n\nSee [njzjz/Pyforce](https://github.com/njzjz/Pyforce) repository and install Pyforce module. Then rename [examples/client.py](examples/client.py) as `force.py` and put it where you run LAMMPS. Add a line in the LAMMPS input file:\n```\nfix 1 all pyforce C H O\n```", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/njzjz/kconmd", "keywords": "molecular dynamics kcon", "license": "", "maintainer": "", "maintainer_email": "", "name": "kconmd", "package_url": "https://pypi.org/project/kconmd/", "platform": "", "project_url": "https://pypi.org/project/kconmd/", "project_urls": { "Homepage": "https://github.com/njzjz/kconmd" }, "release_url": "https://pypi.org/project/kconmd/1.0.17/", "requires_dist": null, "requires_python": "~=3.6.0", "summary": "Molecular dynamics (MD) simulations supported by k-Bags Convolutional Neural Network (kcon).", "version": "1.0.17" }, "last_serial": 4783468, "releases": { "1.0.17": [ { "comment_text": "", "digests": { "md5": "d9069bd85260ca7aeb254906bb541bef", "sha256": "137d54740d94955cf0d251c1e9b9c71bf4697eea7737f022e41c759593d7fce5" }, "downloads": -1, "filename": "kconmd-1.0.17.tar.gz", "has_sig": false, "md5_digest": "d9069bd85260ca7aeb254906bb541bef", "packagetype": "sdist", "python_version": "source", "requires_python": "~=3.6.0", "size": 1396182, "upload_time": "2019-02-05T19:01:27", "url": "https://files.pythonhosted.org/packages/50/9a/871b6f6504bbb4aa7351034be24b5a59af40999a5afbefa49cf2434df25d/kconmd-1.0.17.tar.gz" } ] }, "urls": [ { "comment_text": "", "digests": { "md5": "d9069bd85260ca7aeb254906bb541bef", "sha256": "137d54740d94955cf0d251c1e9b9c71bf4697eea7737f022e41c759593d7fce5" }, "downloads": -1, "filename": "kconmd-1.0.17.tar.gz", "has_sig": false, "md5_digest": "d9069bd85260ca7aeb254906bb541bef", "packagetype": "sdist", "python_version": "source", "requires_python": "~=3.6.0", "size": 1396182, "upload_time": "2019-02-05T19:01:27", "url": "https://files.pythonhosted.org/packages/50/9a/871b6f6504bbb4aa7351034be24b5a59af40999a5afbefa49cf2434df25d/kconmd-1.0.17.tar.gz" } ] }