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        "description": "ipython-cluster-helper\n======================\n.. image:: https://travis-ci.org/roryk/ipython-cluster-helper.svg\n    :target: https://travis-ci.org/roryk/ipython-cluster-helper\n.. image:: https://zenodo.org/badge/3658/roryk/ipython-cluster-helper.svg\n    :target: https://zenodo.org/record/17119#.VT7oWs5dqyM\n\nQuickly and easily parallelize Python functions using IPython on a\ncluster, supporting multiple schedulers. Optimizes IPython defaults to\nhandle larger clusters and simultaneous processes.\n\nExample\n-------\n\nLets say you wrote a program that takes several files in as arguments\nand performs some kind of long running computation on them. Your\noriginal implementation used a loop but it was way too slow\n\n.. code-block:: python\n\n    from yourmodule import long_running_function\n    import sys\n\n    if __name__ == \"__main__\":\n        for f in sys.argv[1:]:\n            long_running_function(f)\n\nIf you have access to one of the supported schedulers you can easily\nparallelize your program across 5 nodes with ipython-cluster-helper\n\n.. code-block:: python\n\n    from cluster_helper.cluster import cluster_view\n    from yourmodule import long_running_function\n    import sys\n\n    if __name__ == \"__main__\":\n        with cluster_view(scheduler=\"lsf\", queue=\"hsph\", num_jobs=5) as view:\n            view.map(long_running_function, sys.argv[1:])\n\nThat's it! No setup required.\n\nTo run a local cluster for testing purposes pass `run_local` as an extra\nparameter to the cluster_view function\n\n.. code-block:: python\n\n    with cluster_view(scheduler=None, queue=None, num_jobs=5,\n                      extra_params={\"run_local\": True}) as view:\n        view.map(long_running_function, sys.argv[1:])\n\nHow it works\n------------\n\nipython-cluster-helper creates a throwaway parallel IPython profile,\nlaunches a cluster and returns a view. On program exit it shuts the\ncluster down and deletes the throwaway profile.\n\nSupported schedulers\n--------------------\n\nPlatform LSF (\"lsf\"), Sun Grid Engine (\"sge\"), Torque (\"torque\"), SLURM (\"slurm\").\n\nCredits\n-------\n\nThe cool parts of this were ripped from `bcbio-nextgen`_.\n\nContributors\n------------\n* Brad Chapman (@chapmanb)\n* Mario Giovacchini (@mariogiov)\n* Valentine Svensson (@vals)\n* Roman Valls (@brainstorm)\n* Rory Kirchner (@roryk)\n* Luca Beltrame (@lbeltrame)\n* James Porter (@porterjamesj)\n* Billy Ziege (@billyziege)\n* ink1 (@ink1)\n* @mjdellwo\n* @matthias-k\n* Andrew Oler (@oleraj)\n* Alain P\u00e9teut (@peteut)\n* Matt De Both (@mdeboth)\n* Vlad Saveliev (@vladsaveliev)\n\n.. _bcbio-nextgen: https://github.com/chapmanb/bcbio-nextgen",
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