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        "description": ".. image:: https://badge.fury.io/py/ipymol.svg\n    :target: https://pypi.python.org/pypi/ipymol/\n    :alt: Latest PyPI version\n\nIPyMOL\n======\n\nIPyMOL allows you to control `PyMOL <https://www.pymol.org>`_ sessions via IPython. This tool is ideal for situations where you'd like to present your work neatly in a `Jupyter Notebook <https://jupyter.org/>`_ or conveniently prototype PyMOL scripts.\n\nBefore You Begin\n----------------\nPlease ensure that PyMOL is in your ``$PATH`` as ``pymol`` or you can start PyMOL in server mode:\n\n.. code:: shell\n\n    $ pymol -R #-cKRQ to run it without a GUI\n\nInstallation\n------------\n\n\n.. code:: shell\n\n    pip install ipymol\n\n\n\nExample Usage\n--------------\nYou can fire up an IPython or IPython Notebook session and start using IPyMOL. For example:\n\n.. code:: python\n\n    from ipymol import viewer as pymol\n    pymol.start()   # Start PyMOL RPC server\n    pymol.fetch('3odu') # Fetch PDB\n    pymol.show_as('cartoon') # Show as cartoon\n    pymol.bg_color('white') # Set background color to white\n    pymol.display() # Show current display\n\nThis series of commands will define a variable ``pymol`` of class ``MolViewer``, which can pass commands to PyMOL, and then create an image of ``PDBID:3odu`` in your IPython session.\nAdditional commands can be invoked via ``pymol.do(\"[ENTER YOUR COMMAND HERE]\")``.\n\nHere's an `example notebook <http://nbviewer.ipython.org/urls/raw.github.com/cxhernandez/iPyMol/master/examples/Example1.ipynb>`_ with more information.\n\nEnjoy!\n\n\n",
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        "keywords": "ipython notebook pymol protein molecular visualization",
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        "name": "ipymol",
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