{ "info": { "author": "Sven Thiele", "author_email": "sthiele78@gmail.com", "bugtrack_url": null, "classifiers": [], "description": "# Installation\n\nYou can install ingranalyze by running:\n\n $ pip3 install --user ingranalyze\n\nOn Linux the executable script can then be found in `~/.local/bin`\n\nand on MacOS the script is under `/Users/YOURUSERNAME/Library/Python/3.2/bin`.\n\n\n# Usage\n\nTypical usage is:\n\n $ ingranalyze.py --mics --repair 5 networkfile observationfile\n\nFor more options you can ask for help as follows:\n\n $ ingranalyze.py -h\n usage: ingranalyze.py [-h] [--mics] [--repair {1,2,3,4,5}] [--list_repairs] networkfile observationfile\n positional arguments:\n networkfile influence graph in bioquali format\n observationfile observations in bioquali format\n\n optional arguments:\n -h, --help show this help message and exit\n --mics compute minimal inconsistent cores\n --repair {1,2,3,4,5} choose repair method: 1 flip observed variations, 2\n flip influences, 3 define network nodes as inputs, 4\n define network nodes as input in an experiment (use\n only in case of multiple experiments), 5 add\n influences. default is 3\n --list_repairs compute all minimal repair sets\n\n\n# Samples\n\nSample files for yeast are available here: [yeast_guelzim.net][1] and [yeast_snf2.obs][2]\n\n[1]: http://bioasp.github.io/downloads/samples/yeastdata/yeast_guelzim.net\n[2]: http://bioasp.github.io/downloads/samples/yeastdata/yeast_snf2.obs", "description_content_type": "text/markdown", "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "http://bioasp.github.io/ingranalyze/", "keywords": "", "license": "GPLv3+", "maintainer": "", "maintainer_email": "", "name": "ingranalyze", "package_url": "https://pypi.org/project/ingranalyze/", "platform": "", "project_url": "https://pypi.org/project/ingranalyze/", "project_urls": { "Homepage": "http://bioasp.github.io/ingranalyze/" }, "release_url": 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