{
    "info": {
        "author": "Leo Goodstadt",
        "author_email": "gtf_to_genes@llew.org.uk",
        "bugtrack_url": null,
        "classifiers": [
            "Development Status :: 5 - Production/Stable",
            "Environment :: Console",
            "Intended Audience :: Developers",
            "Intended Audience :: End Users/Desktop",
            "Intended Audience :: Information Technology",
            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: MIT License",
            "Programming Language :: Python",
            "Topic :: Scientific/Engineering",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
        ],
        "description": "***************************************\nOverview\n***************************************\n    We want an extremely fast, lightweight way to access gene data stored in GTF format.\n\n    The parsed data is held in an intuitive\n        Gene\n             -> transcript\n             -> transcript\n        with exons being stored as intervals\n\n    Our aim is to\n       * cache data in binary format, which can be\n       * re-read in < 10s for even the largest genomes\n\n    Currently initial parsing Ensembl Homo sapiens release 56 takes around 4.5 minutes.\n    The binary data can be reloaded in < 10s.\n    This contains *all* of the data structure in the original GTF file\n\n    Note that we sacrifice memory usage for speed. This is seldom a problem for modern computers\n    and genome sizes (There are around ~400,000 exons but there are stored as intervals / int pairs)\n\n***************************************\nA Simple example\n***************************************\n    ::\n        gene_structures = t_parse_gtf(\"Mus musculus\")\n\n        #\n        #   used cached data for speed\n        #\n        ignore_cache = False\n\n        #\n        #   get all protein coding genes only\n        #\n        genes_by_type = gene_structures.get_genes(gtf_file, logger, [\"protein_coding\"], ignore_cache = ignore_cache)\n\n        #\n        #   print out gene counts\n        #\n        t_parse_gtf.log_gene_types (logger, genes_by_type)\n\n        return genes_by_type",
        "description_content_type": null,
        "docs_url": null,
        "download_url": "https://pypi.python.org/pypi/gtf-to-genes",
        "downloads": {
            "last_day": -1,
            "last_month": -1,
            "last_week": -1
        },
        "home_page": "http://code.google.com/p/gtf-to-genes/",
        "keywords": "GTF Ensembl gene transcript parser GFF bioinformatics science",
        "license": "MIT",
        "maintainer": null,
        "maintainer_email": null,
        "name": "gtf_to_genes",
        "package_url": "https://pypi.org/project/gtf_to_genes/",
        "platform": "UNKNOWN",
        "project_url": "https://pypi.org/project/gtf_to_genes/",
        "project_urls": {
            "Download": "https://pypi.python.org/pypi/gtf-to-genes",
            "Homepage": "http://code.google.com/p/gtf-to-genes/"
        },
        "release_url": "https://pypi.org/project/gtf_to_genes/1.40/",
        "requires_dist": null,
        "requires_python": null,
        "summary": "Fast GTF parser",
        "version": "1.40"
    },
    "last_serial": 1331231,
    "releases": {
        "1.0": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "f06dd38e9bc7eac8b57687217f5cc5ea",
                    "sha256": "5f0a2134f165323106c30abad2deee8e54c474a86031040044b6947e33aa4e12"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.0.tar.gz",
                "has_sig": false,
                "md5_digest": "f06dd38e9bc7eac8b57687217f5cc5ea",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 18980,
                "upload_time": "2010-05-28T17:01:29",
                "url": "https://files.pythonhosted.org/packages/b7/54/25d3ea7d65001e6ca592abaee4f669c02fa80c10192726cb8edd08986074/gtf_to_genes-1.0.tar.gz"
            }
        ],
        "1.01": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "ea80247df9d644a168d95db9eb8c5afb",
                    "sha256": "e0802cd0839f9dd0770cc27dcb4d1b6f4a9c287e458ea3a7f5576eb012f2be93"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.01.tar.gz",
                "has_sig": false,
                "md5_digest": "ea80247df9d644a168d95db9eb8c5afb",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 18991,
                "upload_time": "2010-05-28T17:06:15",
                "url": "https://files.pythonhosted.org/packages/21/1b/9bd5233344406bbbdb6f3088607bfd84c0150fa727a96ecd072f2c7d9d71/gtf_to_genes-1.01.tar.gz"
            }
        ],
        "1.02": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "b3dadfcabf92664b1d31d8210232457c",
                    "sha256": "6dc8e12f8c53de227231f60fb606925fe699334ca527dd4c6ba2194ce76f442c"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.02.tar.gz",
                "has_sig": false,
                "md5_digest": "b3dadfcabf92664b1d31d8210232457c",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 18995,
                "upload_time": "2010-05-28T17:08:22",
                "url": "https://files.pythonhosted.org/packages/f7/e1/216e2667156d48e1ceb9a714bf8d3ce2ac9896e86674455d948889d21e8c/gtf_to_genes-1.02.tar.gz"
            }
        ],
        "1.03": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "a86b9765c2c9a75549af27eee556b35a",
                    "sha256": "d4070c6be174869657beb69aae2df836e5a2a2a2346f8d8255a2f62e936211de"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.03.tar.gz",
                "has_sig": false,
                "md5_digest": "a86b9765c2c9a75549af27eee556b35a",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 18994,
                "upload_time": "2010-05-28T17:15:33",
                "url": "https://files.pythonhosted.org/packages/b5/01/41b154744520ad0c057eca7aaecb8b0e67239a5c3adadf0a964b3127d9e5/gtf_to_genes-1.03.tar.gz"
            }
        ],
        "1.04": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "c7256469c4a1daa56e89be5175d71912",
                    "sha256": "a79f443133a504bf761a94e57606bd9651de30ca61724c9a56f4c59391558e22"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.04.tar.gz",
                "has_sig": false,
                "md5_digest": "c7256469c4a1daa56e89be5175d71912",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 19013,
                "upload_time": "2010-06-15T16:02:07",
                "url": "https://files.pythonhosted.org/packages/f7/a6/1d457574172d90bdf38697171dd322722ef1bb43c29cc49103acea1c4000/gtf_to_genes-1.04.tar.gz"
            }
        ],
        "1.06": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "530274a2695211fd2dac4a6c0e7f67c5",
                    "sha256": "7f79eca901b5cf978653533e3650fc95b2e396a8e1d6487108c0674c04dd7c68"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.06.tar.gz",
                "has_sig": false,
                "md5_digest": "530274a2695211fd2dac4a6c0e7f67c5",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 22142,
                "upload_time": "2010-06-23T14:34:08",
                "url": "https://files.pythonhosted.org/packages/ba/79/2b65639653283fe1f8b8adf147d73ab520f168fa421e97fdec046af585fe/gtf_to_genes-1.06.tar.gz"
            }
        ],
        "1.07": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "d5bed0564cd7fe3dd29db96eafbbd834",
                    "sha256": "0d83ff804665c828cfbe9267fe415a8ac9d82cf0bf6eb3e3ff7eb8748b87cdcb"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.07.tar.gz",
                "has_sig": false,
                "md5_digest": "d5bed0564cd7fe3dd29db96eafbbd834",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 22195,
                "upload_time": "2010-07-01T18:51:06",
                "url": "https://files.pythonhosted.org/packages/14/bb/5246c5971c7da8cdaf6581472056f0aaab49f3471d0f8fc6bbfb216b5ad5/gtf_to_genes-1.07.tar.gz"
            }
        ],
        "1.08": [],
        "1.09": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "0ce9b19aa297dcc1eda43adbe6a2f92d",
                    "sha256": "581c2c6e616d7ad235510e2822eedb724583bad7aefbe36b42cde52e8c42e7a8"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.09.tar.gz",
                "has_sig": false,
                "md5_digest": "0ce9b19aa297dcc1eda43adbe6a2f92d",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 23910,
                "upload_time": "2012-07-12T20:37:01",
                "url": "https://files.pythonhosted.org/packages/47/d4/9fbbc912b084790878b7c59f51771b213f9d6a169233f84c9951e41f9770/gtf_to_genes-1.09.tar.gz"
            }
        ],
        "1.0beta": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "7c1aad9f1a8b6a2bb53ffb42f0937590",
                    "sha256": "ebaad48d21ec0811296b350e8dab38c5e0d5ed50bb91921be6250dd99e578e60"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.0beta.tar.gz",
                "has_sig": false,
                "md5_digest": "7c1aad9f1a8b6a2bb53ffb42f0937590",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 17979,
                "upload_time": "2010-03-12T20:01:43",
                "url": "https://files.pythonhosted.org/packages/db/b2/41b8f386273680549587f8e4ac52d402982bd8631a07f011d39c1c300e38/gtf_to_genes-1.0beta.tar.gz"
            }
        ],
        "1.0beta2": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "6de7b3da40b7147fc92ceb6b048cde9c",
                    "sha256": "ad86d85d3c555e8605a32ca6d9ad34c537e5c2b7c79094b895bc28b45b30718f"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.0beta2.tar.gz",
                "has_sig": false,
                "md5_digest": "6de7b3da40b7147fc92ceb6b048cde9c",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 18454,
                "upload_time": "2010-04-13T16:23:55",
                "url": "https://files.pythonhosted.org/packages/d8/9b/dbb884d7ddba138899608665954b0da8a749127f9d800fb1b67c606acf67/gtf_to_genes-1.0beta2.tar.gz"
            }
        ],
        "1.30": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "ba187e5534e8ebdb3007f6b4b641fc82",
                    "sha256": "82ac773c0440f3b446f3317adab1fbafaa79604edc377383485b3e73710e4d7a"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.30.tar.gz",
                "has_sig": false,
                "md5_digest": "ba187e5534e8ebdb3007f6b4b641fc82",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 26753,
                "upload_time": "2014-12-01T12:51:20",
                "url": "https://files.pythonhosted.org/packages/88/e6/317daf167ba5e076c647ccc3efac284431d404817290e0e7cef2a3e07f6e/gtf_to_genes-1.30.tar.gz"
            }
        ],
        "1.31": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "846ddf639f836b2f8525b30345538c8b",
                    "sha256": "4f6e2cfb3ea20508b62ef22f9778e2c1c809c648f2b416caa91352907c365db9"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.31.tar.gz",
                "has_sig": false,
                "md5_digest": "846ddf639f836b2f8525b30345538c8b",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 26069,
                "upload_time": "2014-12-01T12:57:54",
                "url": "https://files.pythonhosted.org/packages/91/23/83cc3417984c5ff31d5bebaaed70b054632af16af0274821ffe0146b378a/gtf_to_genes-1.31.tar.gz"
            }
        ],
        "1.40": [
            {
                "comment_text": "",
                "digests": {
                    "md5": "15dea634078a0fc1367c7adb8c13c280",
                    "sha256": "a2b74884aebfcd58d786e5c6af9af19723a1864b2ac2544bf8d008aac31d96b8"
                },
                "downloads": -1,
                "filename": "gtf_to_genes-1.40.tar.gz",
                "has_sig": false,
                "md5_digest": "15dea634078a0fc1367c7adb8c13c280",
                "packagetype": "sdist",
                "python_version": "source",
                "requires_python": null,
                "size": 35562,
                "upload_time": "2014-12-04T18:16:03",
                "url": "https://files.pythonhosted.org/packages/35/1d/eb9f5d711ee1b9717f8cfc41eadd0086066a08b99e35da95a0a42a1ae266/gtf_to_genes-1.40.tar.gz"
            }
        ]
    },
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "md5": "15dea634078a0fc1367c7adb8c13c280",
                "sha256": "a2b74884aebfcd58d786e5c6af9af19723a1864b2ac2544bf8d008aac31d96b8"
            },
            "downloads": -1,
            "filename": "gtf_to_genes-1.40.tar.gz",
            "has_sig": false,
            "md5_digest": "15dea634078a0fc1367c7adb8c13c280",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": null,
            "size": 35562,
            "upload_time": "2014-12-04T18:16:03",
            "url": "https://files.pythonhosted.org/packages/35/1d/eb9f5d711ee1b9717f8cfc41eadd0086066a08b99e35da95a0a42a1ae266/gtf_to_genes-1.40.tar.gz"
        }
    ]
}