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    "info": {
        "author": "Joshua A. Anderson",
        "author_email": "joaander@umich.edu",
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            "Development Status :: 5 - Production/Stable",
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            "Intended Audience :: Science/Research",
            "License :: OSI Approved :: BSD License",
            "Operating System :: MacOS :: MacOS X",
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            "Topic :: Scientific/Engineering :: Physics"
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        "description": "# GSD\n\nThe **GSD** file format is the native file format for [HOOMD-blue](https://glotzerlab.engin.umich.edu/hoomd-blue/).\n**GSD** files store trajectories of the **HOOMD-blue** system state in a binary file with efficient random access to\nframes. **GSD** allows all particle and topology properties to vary from one frame to the next. Use the **GSD** Python\nAPI to specify the initial condition for a **HOOMD-blue** simulation or analyze trajectory output with a script. Read a\n**GSD** trajectory with a visualization tool to explore the behavior of the simulation.\n\n## Resources\n\n* [GSD documentation](http://gsd.readthedocs.io): Tutorials, Python API, C API, usage information, and format\n  specification.\n* [Installation Guide](INSTALLING.rst): Instructions for installing and compiling **GSD**.\n* [HOOMD-blue](https://glotzerlab.engin.umich.edu/hoomd-blue/): Simulation engine that reads and writes **GSD** files.\n* [hoomd-users Google Group](https://groups.google.com/d/forum/hoomd-users):\n  Ask questions to the **HOOMD-blue** community.\n* [freud](https://freud.readthedocs.io): A powerful set of tools for analyzing trajectories.\n* [OVITO](https://www.ovito.org/): The Open Visualization Tool works with **GSD** files.\n* [gsd-vmd plugin](https://github.com/mphoward/gsd-vmd): VMD plugin to support **GSD** files.\n\n## HOOMD examples\n\nCreate a hoomd gsd file.\n```python\n>>> s = gsd.hoomd.Snapshot()\n>>> s.particles.N = 4\n>>> s.particles.types = ['A', 'B']\n>>> s.particles.typeid = [0,0,1,1]\n>>> s.particles.position = [[0,0,0],[1,1,1], [-1,-1,-1], [1,-1,-1]]\n>>> s.configuration.box = [3, 3, 3, 0, 0, 0]\n>>> traj = gsd.hoomd.open(name='test.gsd', mode='wb')\n>>> traj.append(s)\n```\n\nAppend frames to a gsd file:\n```python\n>>> def create_frame(i):\n...     s = gsd.hoomd.Snapshot();\n...     s.configuration.step = i;\n...     s.particles.N = 4+i;\n...     s.particles.position = numpy.random.random(size=(4+i,3))\n...     return s;\n>>> with gsd.hoomd.open('test.gsd', 'ab') as t:\n...     t.extend( (create_frame(i) for i in range(10)) )\n...     print(len(t))\n11\n```\n\nRandomly index frames:\n```python\n>>> with gsd.hoomd.open('test.gsd', 'rb') as t:\n...     snap = t[5]\n...     print(snap.configuration.step)\n4\n...     print(snap.particles.N)\n8\n...     print(snap.particles.position)\n[[ 0.56993282  0.42243481  0.5502916 ]\n [ 0.36892486  0.38167036  0.27310368]\n [ 0.04739023  0.13603486  0.196539  ]\n [ 0.120232    0.91591144  0.99463677]\n [ 0.79806316  0.16991436  0.15228257]\n [ 0.13724308  0.14253527  0.02505   ]\n [ 0.39287439  0.82519054  0.01613089]\n [ 0.23150323  0.95167434  0.7715748 ]]\n```\n\nSlice frames:\n```python\n>>> with gsd.hoomd.open('test.gsd', 'rb') as t:\n...     for s in t[5:-2]:\n...         print(s.configuration.step, end=' ')\n4 5 6 7\n```\n\n## File layer examples\n\n```python\nwith gsd.fl.open(name='file.gsd', mode='wb') as f:\n    f.write_chunk(name='position', data=numpy.array([[1,2,3],[4,5,6]], dtype=numpy.float32));\n    f.write_chunk(name='angle', data=numpy.array([0, 1], dtype=numpy.float32));\n    f.write_chunk(name='box', data=numpy.array([10, 10, 10], dtype=numpy.float32));\n    f.end_frame()\n```\n\n```python\nwith gsd.fl.open(name='file.gsd', mode='rb') as f:\n    for i in range(1,f.nframes):\n        position = f.read_chunk(frame=i, name='position');\n        do_something(position);\n```\n\n\n",
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