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        "author": "Gabriele Girelli",
        "author_email": "gabriele.girelli@scilifelab.se",
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        "classifiers": [
            "Development Status :: 4 - Beta",
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            "License :: OSI Approved :: MIT License",
            "Programming Language :: Python :: 3 :: Only",
            "Topic :: Scientific/Engineering :: Bio-Informatics"
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        "description": "gpseqc\n===\n\nA Python3 package that provides tools to estimate the 3D spatial nuclear centrality of genomic regions and compare different centrality rankings.\n\n* Read the (public) [documentation](https://ggirelli.github.io/gpseqc/) for more details.\n* Read the (private) [documentation](https://github.com/ggirelli/gpseqc/wiki) for more details.  \n*Once the repo goes public, private docs will be merged with public ones.*\n\nInstallation\n---\n\nTo **install**, run the following:\n\n```\ngit clone http://github.com/ggirelli/gpseqc\ncd gpseqc\nsudo -H pip3 install .\n```\n\nTo **test** your installation, run: `pytest-3 --pyargs gpseqc`.\n\nTo **uninstall** run the following from within the repository folder:\n\n```\nsudo -H pip3 uninstall gpseqc\n```\n\nTo **update**, first uninstall, and then run the following from within the repository folder.\n\n```\ngit pull\nsudo -H pip3 install .\n```\n\n### Additional dependencies\n\nMost of the required dependencies are automatically install by `pip3`. Still, some require some manual steps. Specifically, `gpseqc` requires the following packages:\n\n* `tkinter`\n\nThat on Ubuntu can be easily installed with:\n\n```bash\nsudo apt install python3-tk\n```\n\nUsage\n---\n\n#### Estimate centrality\n\nThe `gpseqc_estimate` script allows to estimate regional nuclear centrality based on a multi-condition GPSeq experiment. Run `gpseqc_estimate -h` for more details.\n\n#### Compare centrality ranks\n\nThe `gpseqc_compare` script allows to compare different regional centrality ranks. Run `gpseqc_compare -h` for more details.\n\nContributing\n---\n\nWe welcome any contributions to `GPSeqC`. Please, refer to the [contribution guidelines](https://ggirelli.github.io/gpseqc/contributing) if this is your first time contributing! Also, check out our [code of conduct](https://ggirelli.github.io/gpseqc/code_of_conduct).\n\nLicense\n---\n\n```\nMIT License\nCopyright (c) 2017-18 Gabriele Girelli\n```",
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