{
    "info": {
        "author": "Rao Mengnan",
        "author_email": "raomengnan@genedock.com",
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            "Environment :: Console",
            "Intended Audience :: Customer Service",
            "Intended Audience :: End Users/Desktop",
            "License :: OSI Approved :: Apache Software License",
            "Operating System :: OS Independent",
            "Programming Language :: Python"
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        "description": "# \u6a21\u677f\u6587\u4ef6\u8bf4\u660e\n\n\u4f7f\u7528`ini`\u914d\u7f6e\u6587\u4ef6\u7ef4\u62a4`yml`\u4e2d\u5404\u4e2a\u4f4d\u7f6e\u7684\u53d8\u91cf\u503c\u6709\u4ee5\u4e0b\u4f18\u70b9\uff1a\n\n1. \u5c06\u5d4c\u5957\u7684\u7ed3\u6784\u8f6c\u6362\u4e3a\u6241\u5e73\u7684\u7ed3\u6784\uff0c\u964d\u4f4e\u7ba1\u7406\u548c\u7ef4\u62a4\u7684\u96be\u5ea6\n2. \u5c06\u65e0\u5e8f\u7684\u7ed3\u6784\u8f6c\u4e3a\u6709\u5e8f\u7684\u7ed3\u6784\uff0c\u7248\u672c\u53d8\u66f4\u65f6\u66f4\u5bb9\u6613\u68c0\u67e5\u4e0d\u540c\u4e4b\u5904\n3. \u7a7a\u7684\u53c2\u6570\u6a21\u677f\u6587\u4ef6\uff08yml\uff09\u4e2d\u8bb8\u591a\u9ed8\u8ba4\u503c\u65e0\u9700\u6307\u5b9a\uff0c\u4f7f\u7528ini\u914d\u7f6e\u53ea\u9700\u5173\u6ce8\u9700\u8981\u6539\u53d8\u7684\u503c\n4. \u89e3\u8026\u5de5\u4f5c\u6d41\u7248\u672c\u3001\u5de5\u4f5c\u6d41\u6a21\u677f\u7248\u672c\u3001\u53c2\u6570\u6e32\u67d3\u6a21\u5757\n5. \u914d\u5408jinja\u6a21\u677f + gdmetro\u6307\u5b9a\u7684ini\u914d\u7f6e\u6a21\u677f\u89c4\u5219\uff0c\u53ef\u4ee5\u52a8\u6001\u751f\u6210\u4e0d\u540c\u7684\u503c\uff0c\u4f7f\u53c2\u6570\u6587\u4ef6\u6e32\u67d3\u4e0e\u5de5\u4f5c\u6d41\u7248\u672c\u66f4\u65b0\u89e3\u8026\n\n\n## \u53c2\u6570\u58f0\u660e\n\n\u5728ini\u6587\u4ef6\u4e2d\uff0c\u4f7f\u7528`[DECLARE]` section \u58f0\u660e\u53d8\u91cf\uff0c\u4ee5BGI_WGS\u7684\u53c2\u6570\u4e3a\u4f8b\uff1a\n\n```ini\n[DECLARE]\nproject_id = {{project_id}}\nsubproject_id = {{subproject_id}}\nsample_id = {{sample_id}}\ncloud_out_dir ={{cloud_out_dir}}\nlane_id_list = {{lane_id_list}}\nreference_buildversion = {{reference_buildversion}}\ndate = {{date}}\ntask_name = {{task_name}}\n```\n\n\u6309\u7167jinja\u6a21\u677f\u7684\u89c4\u5219\uff0c\u4ee5`{{}}`\u4e24\u5bf9\u82b1\u62ec\u53f7\u5305\u88f9\u7684\u4e3a\u53d8\u91cf\uff0cgdmetro\u4f1a\u53bb\u51fa\u82b1\u62ec\u53f7\u4e2d\u7684\u53d8\u91cf\u540d\uff0c\u5e76\u5728\u6e32\u67d3\u65f6\u4f20\u5165\u58f0\u660e\u7684\u53c2\u6570\u3002\n\n\uff08**\u6ce8\u610f\uff0c\u7b49\u53f7\u5de6\u8fb9\u662f\u7528\u4e8e\u6e32\u67d3ini\u6587\u4ef6\u65f6\u68c0\u67e5\u53c2\u6e32\u67d3\u7ed3\u679c\u7684\uff0c\u4e0d\u4f1a\u53c2\u4e0e\u53c2\u6570\u503c\u7684\u66ff\u6362\u64cd\u4f5c**\uff09\n***\u5728DECLARE\u7ec4\u4e2d\uff0c\u53ea\u80fd\u51fa\u73b0\u53d8\u91cf\u7684\u58f0\u660e\u548c\u4ee5`;`\u5f00\u5934\u7684\u6ce8\u91ca\uff0c\u4e0d\u80fd\u51fa\u73b0\u5176\u4ed6\u7684\u952e\u503c***\n\n## \u5b9a\u4e49\u5b8f\n\n\u6240\u6709\u7684\u5b8f\u5b9a\u4e49\u5e94\u8be5\u5728 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-%}\n{{_loadbamData(lane_id, prefix, pos)}} {%-if not loop.last%}, {%endif-%}\n{%-endfor%}]\n{%- endmacro%}\n```\n\n3. \uff08\u5e94\u7528\uff09\u52a8\u6001\u751f\u6210 loaddata_node_bam1 \u5230 loaddata_node_bam22 \n```\n{%-for index in range(1, 23) -%}\nloaddata_node_bam{{index}}.data = {{ loadbamList('bam', index)}}\n{%endfor-%}\n```\n\n\u66f4\u591ajinja\u6a21\u677f\u7684\u8bed\u6cd5\u8bf7\u53c2\u8003[\u6587\u6863](http://docs.jinkan.org/docs/jinja2/templates.html#if)\n\n## \u53c2\u6570\u6620\u5c04\n\n\u4e3a\u4e86\u5c06json/yml\u7684\u591a\u7ef4\u7ed3\u6784\u8f6c\u4e3a\u4e8c\u7ef4\u7ed3\u6784\uff0c\u6211\u4f7f\u7528 `.`\u4f5c\u4e3a\u5206\u5272\u7b26\u53f7\uff0c\u5c06\u6bcf\u4e00\u7ea7\u522b\u7684\u540d\u79f0\u8fde\u63a5\u8d77\u6765\uff0c\u7528\u4e8e\u552f\u4e00\u6807\u8bc6\u4e00\u4e2a\u5b50\u5c5e\u6027\uff08\u7c7b\u4f3cMongoDB\uff09\uff0c\n\u5bf9\u4e8e\u6570\u7ec4\uff0c\u540c\u6837\u6a21\u4effMongoDB\uff0c\u4f7f\u7528 `$`\u6307\u5b9a\u7b2c\u51e0\u4e2a\u5143\u7d20\uff0c\u7a0b\u5e8f\u89e3\u6790\u65f6\u78b0\u5230\u4e86`$`\u7b26\uff0c\u5219\u8ba4\u4e3a\u7528\u6237\u6307\u5b9a\u4e86\u4e00\u4e2a\u6570\u7ec4\u4e2d\u7b2cn\u4e2a\u5143\u7d20\u7684\u503c\uff1a\n\n\u4f8b\u5982\u914d\u7f6e\u4e2d\u7684\u4e00\u6761\u9879\u76ee\uff1a`loaddata_cnv_head.data.$0.name = 1`\uff0c\u5728\u89e3\u6790\u65f6\u8f6c\u56de\u591a\u7ef4\u7ed3\u6784\u5982\u4e0b\uff1a\n```yaml\nloaddata_cnv_head:\n    data: [{\"name\": 1}]\n\n```\n\n\u4e3a\u4e86\u4fbf\u4e8e\u7ba1\u7406\uff0c\u6211\u6839\u636e\u53c2\u6570\u6587\u4ef6\u7684\u7ed3\u6784 `Inputs`, `Outputs`, `Parameters`\u4ee5\u53ca\u9876\u7ea7\u5c5e\u6027\u505a\u4e86\u5206\u7ec4\u5904\u7406\uff0cyml\u7684\u7ed3\u6784\u5982\u4e0b\uff1a\n\n```yaml\nname: \n\nInputs:\n    xxx:\n\nOutputs:\n    xxx:\n\nParameters:\n    xxx:\n\n```\n\u5bf9\u5e94\u5230ini\u914d\u7f6e\u6587\u4ef6\u4e2d\u7684\u56db\u4e2a\u5206\u7ec4\u5982\u4e0b\uff1a\n\n```ini\n[!DIRECT]\nname = ???\n\n[Inputs]\n\n[Outputs]\n\n[Parameters]\n\n```\n\u7a0b\u5e8f\u4f1a\u4e25\u683c\u6309\u7167\u5206\u7ec4\u6765\u8bfb\u53d6\u4e0d\u540c\u7684\u503c\u586b\u5145\u5230\u7a7a\u7684yml\u6587\u4ef6\u4e2d\uff0c\u6240\u4ee5\u6307\u5b9a\u53d8\u91cf\u65f6\u9700\u8981\u6309\u7167\u5206\u7ec4\u586b\u5165\u3002\n\u4e3a\u4e86\u65b9\u4fbf\u5904\u7406\uff0cgdmetro\u4e2d\u6dfb\u52a0\u4e86\u4e00\u4e2a\u547d\u4ee4\u884c\u5de5\u5177\uff0c\u53ef\u4ee5\u63d0\u53d6yml\u6587\u4ef6\u4e2d`Inputs`, `Outputs`, `Parameters`\u7684\u4e3b\u8981\u53d8\u91cf\uff0c\u5176\u4e2d\n\u5305\u542b\u4ee5\u4e0b\u683c\u5f0f\uff1a\n\n1. 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