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        "author": "Laurent-Philippe Albou",
        "author_email": "laurent.albou@lbl.gov",
        "bugtrack_url": null,
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            "License :: OSI Approved :: BSD License",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.6",
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        "description": "# go-stats python tool\n\nGenerate statistics for a GO release based on a GOLr instance\n\n## Install\n> pip install go-stats\n\n## Content\nThis package contains several scripts used to compute both statistics and changes of Gene Ontology releases.\n\n* go_stats.py: compute the stats for a given release\n* go_ontology_changes.py: compute the changes for two releases (using OBO files)\n* go_annotation_changes.py: compute the changes for two releases (using 1 GOLr instance and previously computed stats)\n* go_refine_stats.py: used to compute the first stats, including ontology stats\n* go_reports.py: used to compute all stats and changes between two releases\n\n## Usage\n```\nimport go_stats\n\nrelease_date = '2019-09-01'\ninclude_protein_binding = False\n\njson_stats = go_stats.compute_stats('http://golr-aux.geneontology.io/solr/', release_date, include_protein_binding)\ngo_stats.write_json(\"stats.json\", json_stats)\n\ntsv_stats = go_stats.create_text_report(json_stats)\ngo_stats.write_text(\"stats.tsv\", tsv_stats)\n\njson_meta = go_stats.create_meta(json_stats)\ngo_stats.write_json(\"meta.json\", json_meta)\n```\n\n\n## Notes\n* current GOLr instance is [http://golr-aux.geneontology.io/solr/](http://golr-aux.geneontology.io/solr/)\n* older GOLr archives are stored in zenodo both as [full archive](https://zenodo.org/record/3267438#.XXN5spNKg4M) and [reference archive](https://zenodo.org/record/3267437#.XXN5spNKg4M) which can be used with [bdbags](https://geneontology.github.io/docs/tools-guide/#programmatic-download-bdbag) to retrieve only the golr database dump (golr-index-contents.tgz)\n* several scripts will be refactored and simplified (e.g. go_refine_stats.py is used to compute the first set of stats files, then for the next releases one can use go_reports.py)\n\n",
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