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        "author": "Robin Andeer",
        "author_email": "robin.andeer@scilifelab.se",
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            "License :: OSI Approved :: MIT License",
            "Programming Language :: Python :: 2",
            "Programming Language :: Python :: 2.7",
            "Programming Language :: Python :: 3",
            "Programming Language :: Python :: 3.3",
            "Programming Language :: Python :: 3.4",
            "Topic :: Software Development"
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        "description": "<p align=\"center\">\n  <a href=\"https://github.com/Clinical-Genomics/genotype\">\n    <img width=\"240px\" height=\"180px\" src=\"artwork/icon.png\"/>\n  </a>\n</p>\n\n# Genotype [![Documentation Status][readthedocs-img]][readthedocs-url] [![Build Status][travis-img]][travis-url]\nManage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.\n\n## Install\n\n```bash\n$ conda install -c bioconda pysam pyyaml sqlalchemy flask\n$ pip install genotype==2.0.0-beta3\n```\n\n## Deploy to Amazon Elastic Beanstalk\n\nThis guide uses the command line utility for Elastic Beanstalk (EB): `eb`.\n\n1. Create a new application by running `eb init` in the root of the repository.\n2. Create a new environment by running `eb create genotype`\n3. Configure environment variables in the AWS console under \"Configuration/Software Configuration/\" for the new environment.\n    - `SQLALCHEMY_DATABASE_URI`: the connection URI for the database you are using\n    - `GENOTYPE_NO_SAVE`: don't bother storing uploaded Excel books since EB doesn't provide persistent storage. Just set it to \"yes\".\n4. Install `genotype` locally and using the same connection URI run: `genotype --database [DB_URI] init <path to SNPs>`\n\n## License\nMIT. See the [LICENSE](LICENSE) file for more details.\n\n\n\n[readthedocs-url]: https://readthedocs.org/projects/genotype/?badge=latest\n[readthedocs-img]: https://readthedocs.org/projects/genotype/badge/?version=latest\n\n[travis-url]: https://travis-ci.org/Clinical-Genomics/genotype\n[travis-img]: https://img.shields.io/travis/Clinical-Genomics/genotype.svg?style=flat\n\n\n",
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