{ "info": { "author": "Robin Andeer", "author_email": "robin.andeer@scilifelab.se", "bugtrack_url": null, "classifiers": [ "Development Status :: 3 - Alpha", "Environment :: Console", "Intended Audience :: Developers", "License :: OSI Approved :: MIT License", "Programming Language :: Python :: 2", "Programming Language :: Python :: 2.7", "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.3", "Programming Language :: Python :: 3.4", "Topic :: Software Development" ], "description": "

\n \n \n \n

\n\n# Genotype [![Documentation Status][readthedocs-img]][readthedocs-url] [![Build Status][travis-img]][travis-url]\nManage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.\n\n## Install\n\n```bash\n$ conda install -c bioconda pysam pyyaml sqlalchemy flask\n$ pip install genotype==2.0.0-beta3\n```\n\n## Deploy to Amazon Elastic Beanstalk\n\nThis guide uses the command line utility for Elastic Beanstalk (EB): `eb`.\n\n1. Create a new application by running `eb init` in the root of the repository.\n2. Create a new environment by running `eb create genotype`\n3. Configure environment variables in the AWS console under \"Configuration/Software Configuration/\" for the new environment.\n - `SQLALCHEMY_DATABASE_URI`: the connection URI for the database you are using\n - `GENOTYPE_NO_SAVE`: don't bother storing uploaded Excel books since EB doesn't provide persistent storage. Just set it to \"yes\".\n4. Install `genotype` locally and using the same connection URI run: `genotype --database [DB_URI] init `\n\n## License\nMIT. See the [LICENSE](LICENSE) file for more details.\n\n\n\n[readthedocs-url]: https://readthedocs.org/projects/genotype/?badge=latest\n[readthedocs-img]: https://readthedocs.org/projects/genotype/badge/?version=latest\n\n[travis-url]: https://travis-ci.org/Clinical-Genomics/genotype\n[travis-img]: https://img.shields.io/travis/Clinical-Genomics/genotype.svg?style=flat\n\n\n", "description_content_type": null, "docs_url": null, "download_url": "", "downloads": { "last_day": -1, "last_month": -1, "last_week": -1 }, "home_page": "https://github.com/robinandeer/genotype", "keywords": "genotype development", "license": "MIT", "maintainer": "", "maintainer_email": "", "name": "genotype", "package_url": "https://pypi.org/project/genotype/", "platform": "", "project_url": "https://pypi.org/project/genotype/", "project_urls": { "Homepage": "https://github.com/robinandeer/genotype" }, "release_url": "https://pypi.org/project/genotype/2.2.1/", "requires_dist": [ "Alchy", "Flask", "Flask-Alchy", 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