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        "author": "Emil Samuelsson",
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            "Development Status :: 3 - Alpha",
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            "License :: OSI Approved :: MIT License",
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        "description": "# genome_update\n\ngenome_update is a package that downloads genomes from NCBI and saves information about them in a yaml file.\nIt can also use a local yaml file to update and download new genomes.\n\nSequence statistics is also calculated for each genome and added to the yaml file.\n\n## Getting Started\n\nThese instructions will provide information how to install and use the software.\n\n### Prerequisites\n\nPython\nPandas\nPyYaml\n\n\n### How to install\n\nTo install Genome_update you can either download source code directly from github and build it your self, an easier alternative is to use pip.\n\nInstalling by pip:\n\n```\npip install genome_update\n```\nPip will also install all prerequisities. It is also recommended to update all prerequisities.\n\nInstalling genome_update and upgrading prerequisities: \n\n```\npip install genome_update --upgrade\n```\n\n### Usage\n\nDownload all genomes from a specific genus:\n```\ngenome_update -g <Genus>\n```\n\nDownload all genomes from a specific genus, but much faster:\n```\ngenome_update -g <Genus> -p <threads>\n```\n\nDownload all genomes from a specific genus, but much faster, to a specific directory (default is /genomes):\n```\ngenome_update -g <Genus> -p <threads> -o <directory>\n```\n\nDownload all genomes from a specific species:\n```\ngenome_update -g <Genus> -s <species_taxid>\n```\n\nTo update a local yaml file:\n```\ngenome_update -u -i <yamlfile>\n```\n\nTo download missing genomes from a local yaml file:\n```\ngenome_update -d -i <yamlfile>\n```\n\nTo download genomes from another domain than bacteria:\n```\ngenome_update -domain <domain> -g <Genus> \n```\n\n\n\n## Authors\n\n* **Emil Samuelsson** - *Initial work* - [Emisam](https://github.com/Emisam)\n\n\n## License\n\nThis project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details\n\n## Acknowledgments\n\n* Would like to thank kblin for his amazing work with the ncbi_genome_download which provided lots of inspiration when writing genome_update.\n\n\n",
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